New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3460753 | 27 (1.170) | 3 (0.140) | 3/240 | NT | 10.2% | coding (665/1017 nt) | PP_3076 | ABC transporter permease |
? | NC_002947 | = 3460786 | 27 (1.220) | coding (632/1017 nt) | PP_3076 | ABC transporter permease |
ATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCG > NC_002947/3460648‑3460935 | aTGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGa < 1:163827/148‑1 (MQ=255) aTGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGa > 2:163827/1‑148 (MQ=255) tGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCcagca < 2:430125/150‑1 (MQ=255) ccGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATc > 2:238316/1‑150 (MQ=255) cGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc > 1:70380/1‑150 (MQ=255) gACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAAc > 2:125218/1‑150 (MQ=255) aCCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGgatga < 2:70380/150‑1 (MQ=255) cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc > 1:279846/1‑150 (MQ=255) cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc < 2:217911/150‑1 (MQ=255) cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc > 1:562054/1‑150 (MQ=255) cAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCaa < 1:465867/150‑1 (MQ=255) ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg < 1:125218/150‑1 (MQ=255) ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg < 2:554146/150‑1 (MQ=255) ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg > 2:449036/1‑150 (MQ=255) tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATacaa > 2:89442/1‑143 (MQ=255) tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATacaa < 1:89442/143‑1 (MQ=255) tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGc > 2:140320/1‑150 (MQ=255) ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc < 2:400503/84‑1 (MQ=255) ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc > 1:400503/1‑84 (MQ=255) ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGc > 2:544112/1‑150 (MQ=255) gCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAgc > 1:376770/1‑150 (MQ=255) aGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcggcatatcttgcccaatgcc < 1:74380‑M2/150‑105 (MQ=255) gAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTg < 1:238316/150‑1 (MQ=255) tCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcgg > 2:231324‑M2/1‑40 (MQ=255) tCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcgg < 1:231324‑M2/126‑87 (MQ=255) cACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTc < 2:586623/150‑1 (MQ=255) gacgTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTAGaa > 2:373/1‑149 (MQ=255) acgTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACGCTGGCAACCCCGACCATACTGCCAGGAAGCGCTGGCCGAACAGGTCGAcc < 1:449036/150‑1 (MQ=255) gTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCa > 2:437676/1‑150 (MQ=255) tCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGccacca < 1:489898/50‑1 (MQ=255) tCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGccacca > 2:489898/1‑50 (MQ=255) ccAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGcccc > 1:255253/1‑150 (MQ=255) cAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGgc < 2:255253/150‑1 (MQ=255) aGCGCCATGATCCCCAGCAGCCCCCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGgcg > 2:159009/1‑150 (MQ=255) | ATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCG > NC_002947/3460648‑3460935 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |