| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3464300 = | 23 (1.000) | 6 (0.320) | 5/202 | NT | 24.2% | coding (101/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein |
| ? | NC_002947 | 3464387 = | 19 (1.020) | coding (14/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein | |||||
TGCCGCCCTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGT > NC_002947/3464151‑3464445 | tGCCGCCCTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCCATGCACGAAAATACAAGCCCCCACAATACtt < 1:615822/150‑1 (MQ=255)caggccagatggtcaaggaattcgacaccgtggtcttcagcgcaccggtcaacaccgtgcaaggcccggtgaagacccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagcccccct < 1:611315‑M1/1‑1 (MQ=255) aggccagatggtcaaggaattcgacaccgtggtcttcagcgcaccggtcaacaccgtgcaaggcccggtgaagacccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagcccccctg < 1:47085‑M1/2‑1 (MQ=255) gccagatggtcaaggaattcgacaccgtggtcttcagcgcaccggtcaacaccgtgcaaggcccggtgaagacccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagcccccctgtg > 2:611315‑M1/147‑150 (MQ=255) ccagatcgtcaaggaattcgacaccgtgctcttaagcgtaccgggcacccccgtgcaaggcccggggaagacccagttcggctgccacctgctggaggtgaccagccgccaggactgattcacccctcccggggatgagccccccTGTgg > 1:166368‑M1/146‑150 (MQ=255) agatggtcaaggaattcgacaccgtggtcttcagcgcaccggtcaacaccgtgcaaggcccggtgaagacccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagccccccTGTGGGa > 2:47085‑M1/144‑150 (MQ=255) cTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAg > 1:356846/1‑150 (MQ=255) ttGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGc > 1:161698/1‑150 (MQ=255) cGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTa < 1:295327/150‑1 (MQ=255) gTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGCGCTTCACCGTAGAACGTAAGGGGGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGa < 1:229015/150‑1 (MQ=255) tAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTc > 2:197302/1‑150 (MQ=255) gTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTCTGCTCGAAAATACAAACCCCCACATTACTTGTAGGAGCGGGTTTACCCGCGAAGACGTCgg > 2:110417/1‑150 (MQ=255) aaaTGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCa < 2:582870/150‑1 (MQ=255) ggAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACg < 1:301144/150‑1 (MQ=255) aacaccgtgcaaggcccggtgaagacccggttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagccccccTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTgtc < 2:159648‑M1/51‑1 (MQ=255) aacaccgtgcaaggcccggtgaagacccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagccccccTGTGGGAGAGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGttggt < 2:181899‑M1/51‑3 (MQ=255) gggcgTAGCGGGGGTCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGGCCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTgtct < 1:110417/149‑1 (MQ=255) ggcgTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTgtctg < 2:356846/150‑1 (MQ=255) accgtgcaaggcccggtgaagacccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagccccccTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTgtctgg < 2:396325‑M1/54‑1 (MQ=255) tgaagacccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagccccccTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCgg > 1:181899‑M1/81‑150 (MQ=255) cccagttcggctaccacctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagccccccTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAAc > 1:396325‑M1/75‑150 (MQ=255) gtgggtggGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCcg < 1:44847/81‑1 (MQ=255) gtgggtggGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCcg > 2:44847/1‑81 (MQ=255) ctgctggaagtgaccagccgccaggactgattcacccctcccggtgatcagccccccTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAgggggg > 1:159648‑M1/58‑150 (MQ=255) gggAGCGGCCTGGACCGTAAAGCCTATGCACAAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCt < 1:283064/150‑1 (MQ=255) ggAGGGGCCGGGGCCGTAAAGCCTATGCACGAAAATACAAGCCACCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTg > 2:583360/1‑150 (MQ=255) gCCGGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCAcc < 2:369384/150‑1 (MQ=255) aaGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGtctggtctgg < 2:506568/95‑1 (MQ=255) aaGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGtctggtctgg > 1:506568/1‑95 (MQ=255) caTGCACGAAAATCAAAGACCCCAGCATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAAGGAGGTTGTCTGGTCTGGCCTTTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGt < 2:22759/149‑1 (MQ=38) aCGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCgg < 1:585258/130‑1 (MQ=255) aCGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCgg > 2:585258/1‑130 (MQ=255) aCAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTATGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGt < 1:197302/150‑1 (MQ=255) ccccACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCg < 2:439699/115‑1 (MQ=255) ccccACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCg > 1:439699/1‑115 (MQ=255) aTACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAgg < 2:240019/150‑1 (MQ=255) tACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGTTCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAggt < 1:506567/150‑1 (MQ=255) | TGCCGCCCTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGT > NC_002947/3464151‑3464445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |