New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3644951 =	16 (0.690)	5 (0.230)	5/240	NT	24.2%	intergenic (‑3/+63)	PP_3211/PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
	?	NC_002947	3644975 =	16 (0.720)					intergenic (‑27/+39)	PP_3211/PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein

GGCATGGGTGCCATTGCTGTAGGTTTTTTCCACCTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGCCGACGGATAACCAACCCGGGC  >  NC_002947/3644826‑3645092                                                                                                                              |                                                                                                                                              cggacaagcccgggttggttatccgtcggcaactactgggtctgcttgaagcccatggcgagagcgaagtgttcctcagccactgacacttgcccaacgacccaatacaccggggcatacaccacCGCTCTCCCCGTGGGTCATGAGCgg                                                                                                                       >  1:569244‑M1/126‑150 (MQ=255)         tGCCATTGCTGTAGGTTTTTTCCACCTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTAt                                                                                                               <  2:91247/150‑1 (MQ=255)          gCCATTGCTGTAGGTTTTTTCCACCTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATg                                                                                                              >  1:494818/1‑150 (MQ=255)            cATTGCTGTAGGTTTTTTCCACCTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGcc                                                                                                            >  2:559181/1‑150 (MQ=255)                       gTTTTTTCCACCTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCg                                                                                                 >  2:249918/1‑150 (MQ=255)                                 ccTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTggg                                                                                       <  1:559181/150‑1 (MQ=255)                                 ccTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTACGCCCCGGTGCGCCGGGGcatacac                                                                                       <  1:122577/150‑7 (MQ=255)                                  tactgggtctgcttgaagcccatggcgagagcgaagtgttcctcagccactgacacttgcccaacgccccggtgcgccggggcatacaccacCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTAt                                                                                                               <  2:554761‑M1/33‑1 (MQ=255)                                  tactgggtctgcttgaagcccatggcgagagcgaagtgttcctcagccactgacacttgcccaacgccccggtgcgccggggcatacaccacCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTAt                                                                                                               >  1:554761‑M1/93‑125 (MQ=255)                                  cTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGc                                                                                      >  1:512563/1‑150 (MQ=255)                                                gaagcccatggcgagagcgaagtgttcctcagccactgacacttgcccaacgccccggtgcgccggggcatacaccacCGCTCTCCCCGTGGGTCATGAGCggt                                                                                                                      >  1:269121‑M1/79‑104 (MQ=255)                                                gaagcccatggcgagagcgaagtgttcctcagccactgacacttgcccaacgccccggtgcgccggggcatacaccacCGCTCTCCCCGTGGGTCATGAGCggt                                                                                                                      <  2:269121‑M1/26‑1 (MQ=255)                                                                          ggCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATggg                                              >  1:177009/1‑150 (MQ=255)                                                                          ggCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATggg                                              >  1:213998/1‑150 (MQ=255)                                                                            cAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCt                                            <  2:494818/150‑1 (MQ=255)                                                                              gggCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGATCTCGCCATGGGCTTc                                          <  2:512563/150‑1 (MQ=255)                                                                                 ccTGCGTCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAg                                       <  1:490449/150‑1 (MQ=255)                                                                                        cTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGAccc                                >  2:414544/1‑150 (MQ=255)                                                                                                   ccTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGccc                     >  2:221284/1‑149 (MQ=255)                                                                                                                    aTCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGCCGACGGATAACCAACCCgg    <  2:213998/150‑1 (MQ=255)                                                                                                                      cAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCCAATCAGAGGTGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGCCGACGGATAACCAACCCGGGc  <  1:414544/150‑1 (MQ=255)                                                                                                                              |                                                                                                                                              GGCATGGGTGCCATTGCTGTAGGTTTTTTCCACCTGATTGGCGAACAAAGGGGTGTCCACACCGATGGTGTTCGGCAGGGCCTGCGGCTGGACGTCGGCCTTGGATAGGGTCTGCATCAACATAGCGCTCTCCCCGTGGGTCATGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGCCGACGGATAACCAACCCGGGC  >  NC_002947/3644826‑3645092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.