New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3778389 =	28 (1.210)	3 (0.130)	3/242	NT	9.7%	coding (1400/2052 nt)	PP_3340	TonB‑dependent receptor
	?	NC_002947	3778418 =	29 (1.300)					coding (1429/2052 nt)	PP_3340	TonB‑dependent receptor

CGACTTCACCAACAAGATGACCGGGCAGGACTACGACATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCC  >  NC_002947/3778243‑3778538                                                                                                                                                   |                                                                                                                                                      tcgccgctggggtcgttcaggcgacggctcacttcgccagaggcgtcctgacgccaataggccacgcggccatcgacccagctggccggggtgaacttgacgccggtttcccagccttcgttgatcgacgggtccaggtcctcgttgcgc                                                                                                                                                    <  2:354315‑M1/4‑1 (MQ=255) tcgccgctggggtcgttcaggcgacggctcacttcgccagaggcgtcctgacgccaataggccacgcggccatcgacccagctggccggggtgaacttgacgccggtttcccagccttcgttgatcgacgggtccaggtcctcgttgcgc                                                                                                                                                    >  1:408056‑M1/147‑150 (MQ=255)        aCCAACAAGATGACCGGGCAGGACTACGACATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAATTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGcc                                                                                                                                             >  2:376059/1‑150 (MQ=255)           aacaaGATGACCGGGCAGGACTACGACATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTAc                                                                                                                                          >  1:457828/1‑150 (MQ=255)              aaGATGACCGGGCAGGACTACGACATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAg                                                                                                                                       >  2:145223/1‑150 (MQ=255)                        ggCAGGACTACGACATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCcgccgc                                                                                                                             <  1:145223/150‑1 (MQ=255)                                     cATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCt                                                                                                                <  1:122667/150‑1 (MQ=255)                                      aTCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTg                                                                                                               >  2:297887/1‑150 (MQ=255)                                         aggcgtcctgacgccaataggccacgcggccatcgacccagctggccggggtgaacttgacgccggtttcccagccttcgttgatcgacgggtccaggtcctcgttGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGAc                                                                                                            >  1:354315‑M1/107‑150 (MQ=255)                                           cGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGAccc                                                                                                          <  2:558268/150‑1 (MQ=255)                                            gACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCg                                                                                                         >  1:280959/1‑150 (MQ=255)                                               tACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCg                                                                                                      >  1:356386/1‑150 (MQ=255)                                                aCGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGa                                                                                                     <  2:3243/150‑1 (MQ=255)                                                    gCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCACCGAGGACCTGGACCCGTCGATCaa                                                                                                 <  2:71990/150‑1 (MQ=255)                                                    gCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCaa                                                                                                 <  2:306496/150‑1 (MQ=255)                                                        aTCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGaa                                                                                             >  2:375909/1‑150 (MQ=255)                                                              cagcCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTgg                                                                                       <  1:377826/150‑1 (MQ=255)                                                                  ccAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGaaa                                                                                   >  2:176626/1‑150 (MQ=255)                                                                       cTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGNGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGc                                                                              <  1:376059/150‑1 (MQ=255)                                                                        tCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCg                                                                             >  1:538443/1‑150 (MQ=255)                                                                        atcgacccagctggccggggtgaacttgacgccggtttcccagccttcgttgatcgacgggtccaggtcctcgttg                                                                                                                                                       <  2:568166‑M1/1‑1 (MQ=255)                                                                        atcgacccagctggccggggtgaacttgacgccggtttcccagccttcgttgatcgacgggtccaggtcctcgttg                                                                                                                                                       >  1:568166‑M1/76‑76 (MQ=255)                                                                             aTTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGCACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAg                                                                        <  2:356386/150‑1 (MQ=255)                                                                                     ttCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCAcccc                                                                >  1:453677/1‑150 (MQ=255)                                                                                       cGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCgg                                                              <  1:176626/150‑1 (MQ=255)                                                                                          cGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCa                                                           <  2:457828/150‑1 (MQ=255)                                                                                              gAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTg                                                                                                               <  2:457668/94‑1 (MQ=255)                                                                                              gAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTg                                                                                                               >  1:457668/1‑94 (MQ=255)                                                                                                       cAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATgg                                              >  2:182574/1‑150 (MQ=255)                                                                                                             ttACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGt                                        <  1:375909/150‑1 (MQ=255)                                                                                                                cagccttcgttgatcgacgggtccaggtcctcgttGCGCCGCAGCCTACAAGGTGCCGCCGCGCAAc                                                                                                                        <  2:178698‑M1/32‑1 (MQ=255)                                                                                                                cagccttcgttgatcgacgggtccaggtcctcgttGCGCCGCAGCCTACAAGGTGCCGCCGCGCAAc                                                                                                                        >  1:178698‑M1/36‑67 (MQ=255)                                                                                                                        ggggCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGc                             <  2:280959/150‑1 (MQ=255)                                                                                                                            ccGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTcc                         >  1:501956/1‑149 (MQ=255)                                                                                                                                       aGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCCTGACGccaata              <  2:501956/150‑5 (MQ=255)                                                                                                                                                  ggCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGc   <  2:453677/150‑1 (MQ=255)                                                                                                                                                   GCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGcc  >  1:297887‑M1/1‑150 (MQ=255)                                                                                                                                                   GCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGcc  <  1:349765‑M1/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CGACTTCACCAACAAGATGACCGGGCAGGACTACGACATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCC  >  NC_002947/3778243‑3778538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.