New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3778389 =	28 (1.210)	3 (0.130)	3/242	NT	9.7%	coding (1400/2052 nt)	PP_3340	TonB‑dependent receptor
	?	NC_002947	3778418 =	29 (1.300)					coding (1429/2052 nt)	PP_3340	TonB‑dependent receptor

CATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGA  >  NC_002947/3778279‑3778563                                                                                                                                            |                                                                                                                                                  cATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCt                                                                                                                                         <  1:122667/150‑1 (MQ=255)  aTCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTg                                                                                                                                        >  2:297887/1‑150 (MQ=255)     aggcgtcctgacgccaataggccacgcggccatcgacccagctggccggggtgaacttgacgccggtttcccagccttcgttgatcgacgggtccaggtcctcgttGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGAc                                                                                                                                     >  1:354315‑M1/107‑150 (MQ=255)       cGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGAccc                                                                                                                                   <  2:558268/150‑1 (MQ=255)        gACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCg                                                                                                                                  >  1:280959/1‑150 (MQ=255)           tACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCg                                                                                                                               >  1:356386/1‑150 (MQ=255)            aCGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGa                                                                                                                              <  2:3243/150‑1 (MQ=255)                gCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCACCGAGGACCTGGACCCGTCGATCaa                                                                                                                          <  2:71990/150‑1 (MQ=255)                gCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCaa                                                                                                                          <  2:306496/150‑1 (MQ=255)                    aTCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGaa                                                                                                                      >  2:375909/1‑150 (MQ=255)                          cagcCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTgg                                                                                                                <  1:377826/150‑1 (MQ=255)                              ccAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGaaa                                                                                                            >  2:176626/1‑150 (MQ=255)                                   cTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGNGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGc                                                                                                       <  1:376059/150‑1 (MQ=255)                                    tCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCg                                                                                                      >  1:538443/1‑150 (MQ=255)                                         aTTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGCACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAg                                                                                                 <  2:356386/150‑1 (MQ=255)                                                 ttCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCAcccc                                                                                         >  1:453677/1‑150 (MQ=255)                                                   cGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCgg                                                                                       <  1:176626/150‑1 (MQ=255)                                                      cGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCa                                                                                    <  2:457828/150‑1 (MQ=255)                                                          gAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTg                                                                                                                                        >  1:457668/1‑94 (MQ=255)                                                          gAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTg                                                                                                                                        <  2:457668/94‑1 (MQ=255)                                                                   cAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATgg                                                                       >  2:182574/1‑150 (MQ=255)                                                                         ttACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGt                                                                 <  1:375909/150‑1 (MQ=255)                                                                            cagccttcgttgatcgacgggtccaggtcctcgttGCGCCGCAGCCTACAAGGTGCCGCCGCGCAAc                                                                                                                                                 >  1:178698‑M1/36‑67 (MQ=255)                                                                            cagccttcgttgatcgacgggtccaggtcctcgttGCGCCGCAGCCTACAAGGTGCCGCCGCGCAAc                                                                                                                                                 <  2:178698‑M1/32‑1 (MQ=255)                                                                                    ggggCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGc                                                      <  2:280959/150‑1 (MQ=255)                                                                                        ccGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTcc                                                  >  1:501956/1‑149 (MQ=255)                                                                                                gtccaggtcctcgttgcgcggcggcaccttgtaggctgcggcgcAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCct                                          >  1:354315‑M2/45‑150 (MQ=255)                                                                                                   aGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCCTGACGccaata                                       <  2:501956/150‑5 (MQ=255)                                                                                                            gttgcgcggcggcaccttgtaggctgcggcgcAACGAGGACCTGGACCCGTCGATCAACGAAGGCTg                                                                                                                 <  2:178698‑M2/35‑1 (MQ=255)                                                                                                            gttgcgcggcggcaccttgtaggctgcggcgcAACGAGGACCTGGACCCGTCGATCAACGAAGGCTg                                                                                                                 >  1:178698‑M2/33‑67 (MQ=255)                                                                                                              ggCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGc                            <  2:453677/150‑1 (MQ=255)                                                                                                               GCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGcc                           <  1:349765‑M1/150‑1 (MQ=255)                                                                                                               GCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGcc                           >  1:297887‑M1/1‑150 (MQ=255)                                                                                                                   cgcAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCg                       <  2:349765/150‑1 (MQ=255)                                                                                                                         cTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGaa                 >  1:396837/1‑150 (MQ=255)                                                                                                                         cTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGCGAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGGGAGCCGTCGCCTGaa                 >  2:54899/1‑150 (MQ=255)                                                                                                                         cTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGACCAACAAAGGATTGCAAACCGGCGGCAAGTTCACAACGGCCAGCTGGGTCGATGGGCCACTGTCGTATTGTCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGaa                 <  1:474321/150‑1 (MQ=255)                                                                                                                                        gcgcAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGa  <  2:354315‑M2/146‑1 (MQ=255)                                                                                                                                        gcgcAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGa  >  1:408056‑M2/5‑150 (MQ=255)                                                                                                                                           cAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGAt                                                                         >  1:568166‑M2/2‑76 (MQ=255)                                                                                                                                           cAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGAt                                                                         <  2:568166‑M2/75‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                  CATCAACGACTACGGGCTGATCAAGCAGCCCAAGCTCAGCATTGTCTATTCGCCGTGGAAGTTCGCCAGCGTTTACGCCAACTGGGGCCGCACCTTCCAGGTCGGGACGGGCGCCGCAGCCTACAAGGTGCCGCCGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGA  >  NC_002947/3778279‑3778563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.