New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4098110 =	39 (1.690)	3 (0.140)	3/232	NT	8.2%	coding (624/975 nt)	qor‑II	quinone oxidoreductase
	?	NC_002947	4098152 =	31 (1.450)					coding (582/975 nt)	qor‑II	quinone oxidoreductase

AGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGC  >  NC_002947/4097961‑4098254                                                                                                                                                      |                                                                                                                                                  tgtacggtgcggccggtgctttgggccagctgatggtgccttgggcgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaa                                                                                                                                                   >  2:342154‑M1/150‑150 (MQ=255)  gCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCacac                                                                                                                                                  >  2:582912/1‑150 (MQ=255)    acggtgcggccggtgctttgggccagctgatggtgccttgggcgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaAcct                                                                                                                                                <  2:366366‑M1/4‑1 (MQ=255)     cggtgcggccggtgctttgggccagctgatggtgccttgggcgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgtcagcatgtgctggtgttcgacgcaaaaAcctt                                                                                                                                               >  1:366233‑M1/146‑150 (MQ=255)     aGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAcctt                                                                                                                                               >  2:427844/1‑150 (MQ=255)      ggtgcggccggtgctttgggccagcggatggtgccttgggcgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaTccttg                                                                                                                                              >  2:92543‑M1/145‑150 (MQ=255)        cATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggc                                                                                                                                            <  2:573858/150‑1 (MQ=255)             gCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggccttgg                                                                                                                                       <  2:111240/150‑1 (MQ=255)               aTTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGt                                                                                                                                     >  2:460454/1‑150 (MQ=255)                  gAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAg                                                                                                                                  <  1:576102/150‑1 (MQ=255)                             ccTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACct                                                                                                                       <  1:197105/150‑1 (MQ=255)                               tCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggccttgg                                                                                                                                       >  1:158083/1‑132 (MQ=255)                               tCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggccttgg                                                                                                                                       <  2:158083/132‑1 (MQ=255)                               tCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACctgg                                                                                                                     >  1:366366/1‑150 (MQ=255)                                       ccttgggcgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaAccttggc                                                                                                                                            >  1:287278‑M1/112‑119 (MQ=255)                                       ccttgggcgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaAccttggc                                                                                                                                            <  2:287278‑M1/8‑1 (MQ=255)                                       aGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACctggctg                                                                                                                  <  2:580031/145‑1 (MQ=255)                                       aGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACctggctg                                                                                                                  >  1:580031/1‑145 (MQ=255)                                       aGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCaa                                                                                                             >  2:218813/1‑150 (MQ=255)                                       aGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCaa                                                                                                             >  2:269863/1‑150 (MQ=255)                                              gCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttttt                                                                                                      <  1:269863/150‑1 (MQ=255)                                              cgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttttt                                                                                                      >  2:297996‑M1/105‑150 (MQ=255)                                                aCCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGc                                                                                                    <  2:511369/150‑1 (MQ=255)                                                aCCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGc                                                                                                    >  2:5486/1‑150 (MQ=255)                                                  cGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGTGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACGCCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGt                                                                                                  <  1:573645/150‑1 (MQ=255)                                                  cGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGt                                                                                                  >  2:473907/1‑150 (MQ=255)                                                  cGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGt                                                                                                  <  1:460454/150‑1 (MQ=255)                                                      ggTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGaa                                                                                              <  1:5486/150‑1 (MQ=255)                                                          ccgccgAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAACGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑Acc                                                                                         >  2:428222/1‑150 (MQ=255)                                                            gccgAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAg                                                                                       >  1:354740/1‑150 (MQ=255)                                                                 ggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttt                                                                                                        >  1:327883‑M1/86‑129 (MQ=255)                                                                 ggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttt                                                                                                        <  2:327883‑M1/44‑1 (MQ=255)                                                                      aCCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTgg                                                                             <  2:354740/150‑1 (MQ=255)                                                                         aacaaGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACct                                                                                                                       >  1:42805/1‑106 (MQ=255)                                                                         aacaaGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACct                                                                                                                       <  2:42805/106‑1 (MQ=255)                                                                         aacaaGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCaa                                                                          >  1:269406/1‑150 (MQ=255)                                                                                cgcgCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACccgccg                                                                   >  1:357193/1‑150 (MQ=255)                                                                                  ggcagccTGAGGGTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCgccgcc                                                                 >  2:167957/6‑150 (MQ=255)                                                                                     gcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaAccttggc                                                                                                                                            >  2:71682‑M1/66‑73 (MQ=255)                                                                                     gcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaAccttggc                                                                                                                                            <  1:71682‑M1/8‑1 (MQ=255)                                                                                        cTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                           >  2:181616/1‑150 (MQ=255)                                                                                        cTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                           >  1:81007/1‑150 (MQ=255)                                                                                                                      acCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATaccacc                             <  2:81007/150‑1 (MQ=255)                                                                                                                      acCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATaccacc                             <  1:582912/150‑1 (MQ=255)                                                                                                                        cTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                           <  1:342294/118‑1 (MQ=255)                                                                                                                        cTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                           >  2:342294/1‑118 (MQ=255)                                                                                                                              cACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCAc                     >  1:246474/1‑150 (MQ=255)                                                                                                                                 gCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGt                  <  1:427844/150‑1 (MQ=255)                                                                                                                                     tCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGcc              >  1:306082/1‑150 (MQ=255)                                                                                                                                        tACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACccgc                                                                     >  2:417138/1‑92 (MQ=255)                                                                                                                                        tACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACccgc                                                                     <  1:417138/92‑1 (MQ=255)                                                                                                                                            cTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGgt       >  1:512943/1‑150 (MQ=255)                                                                                                                                                 gCCACCCCGTGGCGTTGGATCAGCTCGCTCACCTATTTTGCCAAGGTTTTTGCGTCGTACAATAAATTCCTGC‑AGCACCCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTcgc  <  1:11242/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  AGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGC  >  NC_002947/4097961‑4098254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.