New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4098110 =	39 (1.690)	3 (0.140)	3/232	NT	8.2%	coding (624/975 nt)	qor‑II	quinone oxidoreductase
	?	NC_002947	4098152 =	31 (1.450)					coding (582/975 nt)	qor‑II	quinone oxidoreductase

GCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACA  >  NC_002947/4098006‑4098300                                                                                                                                                   |                                                                                                                                                      gCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttttt                                                                                                                                                    <  1:269863/150‑1 (MQ=255) cgcgacacctgggggcgacggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttttt                                                                                                                                                    >  2:297996‑M1/105‑150 (MQ=255)   aCCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGc                                                                                                                                                  >  2:5486/1‑150 (MQ=255)   aCCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGc                                                                                                                                                  <  2:511369/150‑1 (MQ=255)     cGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGTGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACGCCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGt                                                                                                                                                <  1:573645/150‑1 (MQ=255)     cGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGt                                                                                                                                                <  1:460454/150‑1 (MQ=255)     cGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGt                                                                                                                                                >  2:473907/1‑150 (MQ=255)         ggTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGaa                                                                                                                                            <  1:5486/150‑1 (MQ=255)             ccgccgAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAACGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑Acc                                                                                                                                       >  2:428222/1‑150 (MQ=255)               gccgAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAg                                                                                                                                     >  1:354740/1‑150 (MQ=255)                    ggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttt                                                                                                                                                      >  1:327883‑M1/86‑129 (MQ=255)                    ggtgataggggtggtatcgcgcctgcaaagtgtggagcgggcacgggcggcgggttgccagcatgtgctggtgttcgacgcaaaaACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGttt                                                                                                                                                      <  2:327883‑M1/44‑1 (MQ=255)                         aCCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTgg                                                                                                                           <  2:354740/150‑1 (MQ=255)                            aacaaGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCaa                                                                                                                        >  1:269406/1‑150 (MQ=255)                                   cgcgCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACccgccg                                                                                                                 >  1:357193/1‑150 (MQ=255)                                     ggcagccTGAGGGTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCgccgcc                                                                                                               >  2:167957/6‑150 (MQ=255)                                           cTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                                                                         >  2:181616/1‑150 (MQ=255)                                           cTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                                                                         >  1:81007/1‑150 (MQ=255)                                                                         acCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATaccacc                                                                           <  1:582912/150‑1 (MQ=255)                                                                         acCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATaccacc                                                                           <  2:81007/150‑1 (MQ=255)                                                                           cTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                                                                         >  2:342294/1‑118 (MQ=255)                                                                           cTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGcc                                                                                                         <  1:342294/118‑1 (MQ=255)                                                                                 cACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCAc                                                                   >  1:246474/1‑150 (MQ=255)                                                                                    gCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGt                                                                <  1:427844/150‑1 (MQ=255)                                                                                        tCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGcc                                                            >  1:306082/1‑150 (MQ=255)                                                                                           tACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACccgc                                                                                                                   >  2:417138/1‑92 (MQ=255)                                                                                           tACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACccgc                                                                                                                   <  1:417138/92‑1 (MQ=255)                                                                                               cTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGgt                                                     >  1:512943/1‑150 (MQ=255)                                                                                                    gCCACCCCGTGGCGTTGGATCAGCTCGCTCACCTATTTTGCCAAGGTTTTTGCGTCGTACAATAAATTCCTGC‑AGCACCCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTcgc                                                <  1:11242/150‑1 (MQ=255)                                                                                                     aaaaaccttggccagccaggtgcgtgagctgacccaaggccaaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTcgcg                                               >  2:297996‑M2/47‑150 (MQ=255)                                                                                                       aaaccttggccagccaggtgcgtgagctgacccaaggccaaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCAcc                                                                  >  1:327883‑M2/45‑129 (MQ=255)                                                                                                       aaaccttggccagccaggtgcgtgagctgacccaaggccaaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCAcc                                                                  <  2:327883‑M2/85‑1 (MQ=255)                                                                                                          CCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCaa                                          <  1:582815‑M1/150‑1 (MQ=255)                                                                                                            TTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCCTGCCCAAgg                                        <  1:26448‑M1/150‑1 (MQ=255)                                                                                                            TTGGCCTTGGGTCAGCTCACGCACAAGGCACGCCAAGATATTTGGGACGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAgg                                        <  2:71158‑M1/150‑1 (MQ=255)                                                                                                                CCTTGGGTCAGCTCACGCACCTGGCTGGCAAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCTCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCAcc                                    >  2:357193‑M1/1‑150 (MQ=255)                                                                                                                     ggTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAg                               <  2:582815/150‑1 (MQ=255)                                                                                                                      gTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGc                              >  1:297135/1‑150 (MQ=255)                                                                                                                       tCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAg                                                                                        >  2:61038/1‑91 (MQ=255)                                                                                                                       tCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAg                                                                                        <  1:61038/91‑1 (MQ=255)                                                                                                                               cGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCaaa                     <  2:269406/150‑1 (MQ=255)                                                                                                                                    ctggctggCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCAcc                >  2:314297/1‑150 (MQ=255)                                                                                                                                       gctggcCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGc             >  1:561509/1‑150 (MQ=255)                                                                                                                                           gccaaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGgc                                                                                      >  2:71682‑M2/9‑73 (MQ=255)                                                                                                                                           gccaaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGgc                                                                                      <  1:71682‑M2/65‑1 (MQ=255)                                                                                                                                           gccaaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAgg                                        >  1:287278‑M2/9‑119 (MQ=255)                                                                                                                                           gccaaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAgg                                        <  2:287278‑M2/111‑1 (MQ=255)                                                                                                                                             caaggaTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCCGCTGGCCCAAAGCACCGGCCGCAcc       >  2:92543‑M2/7‑150 (MQ=255)                                                                                                                                              aaggtTTTTGCGTCGAAC‑ACCAGCACATGCTGACAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCg      >  1:366233‑M2/6‑150 (MQ=255)                                                                                                                                               aggtTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGt     <  2:366366‑M2/146‑1 (MQ=255)                                                                                                                                                  tTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACa  >  2:342154‑M2/2‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAAC‑ACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACA  >  NC_002947/4098006‑4098300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.