New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4267344 =	28 (1.210)	5 (0.220)	5/242	NT	18.1%	coding (558/1254 nt)	galP‑IV	porin‑like protein
	?	NC_002947	4267424 =	18 (0.800)					coding (478/1254 nt)	galP‑IV	porin‑like protein

TTTGCTGGTAGATGTCCTCCAATTGCGAGTGCCAGGCGCCGATCAGTGTTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCC  >  NC_002947/4267196‑4267488                                                                                                                                                     |                                                                                                                                                  tttGCTGGTAGATGTCCTCCAATTGCGAGTGCCAGGCGCCGATCAGTGTTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGt                                                                                                                                                  >  1:55768/1‑150 (MQ=255) gatgacgggcgagcggccgacgactacggtcgggccgggctggcggcgaagctgcgtatgtccgcgaccgagctgaaggtgggggagttgttgccggatattccgctgttgcgttacgacgatggccgcctgctgccgcagaccttccGt                                                                                                                                                  <  2:40129‑M1/2‑1 (MQ=255) gatgacgggcgagcggccgacgactacggtcgggccgggctggcggcgaagctgcgtatgtccgcgaccgagctgaaggtgggggagttgttgccggatattccgctgttgcgttacgacgatggccgcctgctgccgcagaccttccGt                                                                                                                                                  <  1:514442‑M1/2‑1 (MQ=255)    gCTGGTAGATGTCCTCCAATTGCGAGTGCCAGGCGCCGATCATTGTTCGCTGCTGGTTTAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTTgc                                                                                                                                               <  2:260934/150‑1 (MQ=255)       ggTAGATGTCCTCCAATTGCGAGTGCCAGGCGCCGATCAGTGTTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑a                                                                                                                                           <  2:181736/150‑1 (MQ=255)              gTCCTCCAATTGCGAGTGCCAGGCGCCGATCAGTGTTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCAc                                                                                                                                    >  2:93027/1‑150 (MQ=255)                                      gcCGATCAGTGTTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAg                                                                                                            <  2:123404/150‑1 (MQ=255)                                            cAGTGTTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAg                                                                                                      <  1:407259/150‑1 (MQ=255)                                             ggcgaagctgcgtatgtccgcgaccgagctgaaggtgggggagttgttgccggatattccgctgttgcgttacgacgatggccgcctgctgccgcagaccttccGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAgg                                                                                                     <  1:454233‑M1/46‑1 (MQ=255)                                              gtgtTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGc                                                                                                    >  2:389212/1‑150 (MQ=255)                                                 ttCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCtt                                                                                                 <  1:389212/150‑1 (MQ=255)                                                    gctgctGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGa                                                                                              >  1:40129/1‑150 (MQ=255)                                                     ctgctgGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGAt                                                                                             >  2:369158/1‑150 (MQ=255)                                                       gctgGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGAttt                                                                                           <  2:55768/150‑1 (MQ=255)                                                           gTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCcg                                                                                       >  1:113061/1‑150 (MQ=255)                                                           gTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCcg                                                                                       >  1:110748/1‑150 (MQ=255)                                                            ttGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCcgc                                                                                      <  2:110748/150‑1 (MQ=255)                                                              gAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGACCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGa                                                                                    >  2:398418/1‑150 (MQ=255)                                                                               gtgggggagttgttgccggatattccgctgttgcgttacgacgatggccgcctgctgccgcagaccttccGTGGTGCCATGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATg                                                                          <  2:281243‑M1/74‑1 (MQ=255)                                                                               gtgggggagttgttgccggatattccgctgttgcgttacgacgatggccgcctgctgccgcagaccttccGTGGTGCCATGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATg                                                                          >  1:281243‑M1/71‑144 (MQ=255)                                                                                    tAGTTGAAGCCGTCCGAGGTGCCACCGGGTGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAg                                                              <  2:539432/150‑1 (MQ=255)                                                                                    tAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAg                                                              <  2:301611/150‑1 (MQ=255)                                                                                    ggagttgttgccggatattgggctgttgcgttacgacgatggccgcctgctgccgcagcccttccGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAg                                                              >  1:188880‑M1/66‑150 (MQ=255)                                                                                      gTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTGAGGACTTAGATGCCCCGCGAGGCGAGCAGGGCACCACGGAAGGt                                                            >  2:529679/1‑150 (MQ=255)                                                                                           aGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGa                                                                                              <  2:176917/111‑1 (MQ=255)                                                                                           aGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGa                                                                                              >  1:176917/1‑111 (MQ=255)                                                                                               cggatattccgctgttgcgttacgacgatggccgcctgctgccgcagaccttccGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGgcag                                                   >  2:454233‑M1/55‑150 (MQ=255)                                                                                                tCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTg                                                                                                                        >  1:451296/1‑80 (MQ=255)                                                                                                tCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTg                                                                                                                        <  2:451296/80‑1 (MQ=255)                                                                                                           cccGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGAACGACGGAAGGTACAGGGCAGCAGGCGGCCAtc                                       >  1:188842/1‑150 (MQ=255)                                                                                                                  gcgGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTaa                                <  1:93027/150‑1 (MQ=255)                                                                                                                    ggCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGCAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACg                              >  2:230845/1‑150 (MQ=255)                                                                                                                      cccAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGATACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCa                            >  2:188417/1‑150 (MQ=255)                                                                                                                         aGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACa                         >  1:581292/1‑150 (MQ=255)                                                                                                                                 aGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAata                 >  2:45364/1‑150 (MQ=255)                                                                                                                                   gTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTTGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATc               >  2:551449/1‑150 (MQ=255)                                                                                                                                               cGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTc   <  1:529679/150‑1 (MQ=255)                                                                                                                                                gAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTcc  >  1:199973/1‑150 (MQ=255)                                                                                                                                                 aaGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGa                                                                               >  2:77187/1‑72 (MQ=255)                                                                                                                                                 aaGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGa                                                                               <  1:77187/72‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TTTGCTGGTAGATGTCCTCCAATTGCGAGTGCCAGGCGCCGATCAGTGTTCGCTGCTGGTTGAAGCGGTACTCGGCGCCGGCGTAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGC‑AGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCC  >  NC_002947/4267196‑4267488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.