New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4276970 =	28 (1.210)	6 (0.270)	6/244	NT	18.4%	coding (322/1236 nt)	glcF	glycolate oxidase iron‑sulfur subunit
	?	NC_002947	4277012 =	26 (1.150)					coding (364/1236 nt)	glcF	glycolate oxidase iron‑sulfur subunit

TCGAAGGCGAGCCGGTCACCGCCAGCACCCAATTGCACCTGGACCGCTGCCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCA  >  NC_002947/4276824‑4277109                                                                                                                                                   |                                                                                                                                            atccggcgtgcatggcgcactgccggacgctggcccggtgtggtgacttgcgccggcaacttgcgtttgactgaggccggtagcagcgggcgcagcacctggccgctgcgggtcagggccttgaacagtgccgggcgcggcaccaccgcc                                                                                                                                          <  2:209170‑M1/4‑1 (MQ=255)           gCCGGTCACCGCCAGCACCCAATTGCACCTGGACCGCTGCCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCa                                                                                                                                <  2:581693/150‑1 (MQ=255)                  aCCGCCAGCACCCAATTGCACCTGGACCGCTGCCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTg                                                                                                                         >  1:118572/1‑150 (MQ=255)                               tggcccggtgtggtgacttgcgccggcaacttgcgtttgactgaggccggtagcagcgggcgcagcacctggccgctgcgggtcagggccttgaacagtgccgggcgcggcaccacCGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGcc                                                                                                            <  2:24485‑M1/34‑1 (MQ=255)                                  cccggtgtggtgacttgcgccggcaacttgcgtttgactgaggccggtagcagcgggcgcagcacctggccgctgcgggtcagggccttgaacagtgccgggcgcggcaccacCGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCtgc                                                                                                         >  1:355117‑M1/114‑150 (MQ=255)                                     aCCAGGACCGCTGGCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACAACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCtgcgtg                                                                                                      >  2:411648/1‑150 (MQ=255)                                         tggtgacttgcgccggcaacttgcgtttgactgaggccggtagcagcgggcgcagcacctggccgctgcgggtcagggccttgaacagtgccgggcgcggcaccacCGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCggt                                                                                                  >  1:209170‑M1/107‑150 (MQ=255)                                           aCCGCTGCCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTCCggtgg                                                                                                >  2:503158/1‑150 (MQ=255)                                             cGCTGCCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGgtggtg                                                                                              >  1:485892/1‑150 (MQ=255)                                              gCTGCCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGc                                                                                             >  1:409775/1‑150 (MQ=255)                                                 tgcgccggcaacttgcgtttgactgaggccggtagcagcgggcgcagcacctggccgctgcgggtcagggccttgaacagtgccgggcgcggcaccacCGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCcgc                                                                                          >  1:24485‑M1/99‑150 (MQ=255)                                                    tGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTGCGCCAGCGCCTGTTGCGCCTGGGCCTGCGGGCGGTGGTGCCGCGcc                                                                                       >  1:223396/1‑150 (MQ=255)                                                                  tttgactgaggccggtagcagcgggcgcagcacctggccgctgcgggtcagggccttgaacagtgccgggcgcggcaccacCGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGc                                                                                             >  1:112552‑M1/82‑130 (MQ=255)                                                                  tttgactgaggccggtagcagcgggcgcagcacctggccgctgcgggtcagggccttgaacagtgccgggcgcggcaccacCGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGc                                                                                             <  2:112552‑M1/49‑1 (MQ=255)                                                                             cTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGAGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGTCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGAcctg                                                              >  1:130825/1‑148 (MQ=255)                                                                                   aTCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCgg                                                        >  2:526900/1‑150 (MQ=255)                                                                                                  ccACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGccc                                         >  1:302552/1‑150 (MQ=255)                                                                                                     cGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCgct                                      >  2:537797/1‑150 (MQ=255)                                                                                                        tCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCt                                                                                                                 >  2:606405/1‑72 (MQ=255)                                                                                                        tCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCt                                                                                                                 <  1:606405/72‑1 (MQ=255)                                                                                                          tgctgGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCACCCGGTAATTTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTAc                                 >  2:173649/1‑150 (MQ=255)                                                                                                             tgGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCgg                              >  1:434714/1‑150 (MQ=255)                                                                                                              ggACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGc                             >  1:540311/1‑150 (MQ=255)                                                                                                                  aTCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCAGCTTCa                         <  2:485892/150‑1 (MQ=255)                                                                                                                   tCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGccc                                                                     <  2:271130/105‑1 (MQ=255)                                                                                                                   tCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGccc                                                                     >  1:271130/1‑105 (MQ=255)                                                                                                                    cGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGt                       <  2:302552/150‑1 (MQ=255)                                                                                                                        cgcgCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCaaa                   <  1:537797/150‑1 (MQ=255)                                                                                                                         gcgcAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGTCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAAc                  <  2:118572/150‑1 (MQ=255)                                                                                                                             aGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCaa              <  2:409775/150‑1 (MQ=255)                                                                                                                             aGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCaa              <  1:411648/150‑1 (MQ=255)                                                                                                                                 gTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTg          >  1:612124/1‑150 (MQ=255)                                                                                                                                 gTCGAGCAGCAGGTGACACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTg          >  2:458731/1‑150 (MQ=255)                                                                                                                                    gAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCg       >  1:28243/1‑150 (MQ=255)                                                                                                                                         gcagGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCa  >  1:408603/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                            TCGAAGGCGAGCCGGTCACCGCCAGCACCCAATTGCACCTGGACCGCTGCCTGACCTGCCGCAACTGCGAAACCACCTGCCCATCGGGGGTGAAGTACCACGATCTGCTGGACATCGGCCGCGCAGTGGTCGAGCAGCAGGTGCCACGCCCGCTCGGCCAGCGCCTGTTGCGCCTGGGCCTGCGTGCGGTGGTGCCGCGCCCGGCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCA  >  NC_002947/4276824‑4277109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.