New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4422784	26 (1.120)	4 (0.180)	4/240	NT	14.0%	coding (208/300 nt)	PP_5645	hypothetical protein
	?	NC_002947	= 4422807	24 (1.080)					coding (185/300 nt)	PP_5645	hypothetical protein

TGACAGGAGTACATCCGTACTCTTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGTCGCACCGGCGCGCGAAAACCTCACCCGCACATCAATGTAGGTGCCGTCATCGAGGAATTCTTCGT  >  NC_002947/4422646‑4422930                                                                                                                                           |                                                                                                                                                   tGACAGGAGTACATCCGTACTCTTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTAt                                                                                                                                         >  1:207526/1‑150 (MQ=255)      caaGTACATCCCTACTCTTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCTGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCgg                                                                                                                                    <  1:471827/148‑1 (MQ=255)         gTACATCCGTACTCTTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGGGGAGGAATTGTTTGGTAGTAGGGAAAGCATCACTAGAAATTGGGCGAGCATGGCCTATGCCGAATGCCAAGGCATTGGTCATCGATTCACTATgaagggga                                                                                                                                 >  1:255406/1‑143 (MQ=255)                   aCTCTTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATc                                                                                                                                                   <  2:551798/122‑1 (MQ=255)                   aCTCTTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATc                                                                                                                                                   >  1:551798/1‑122 (MQ=255)                      ctTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGActcct                                                                                                                    <  2:290944/150‑1 (MQ=255)                       tttCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGActcctc                                                                                                                   >  1:46825/1‑150 (MQ=255)                           cGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCAc                                                                                                                                            >  1:480364/1‑121 (MQ=255)                           cGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCAc                                                                                                                                            <  2:480364/121‑1 (MQ=255)                            gCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGAtt                                                                                                                                               >  2:258137/1‑117 (MQ=255)                            gCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGAtt                                                                                                                                               <  1:258137/117‑1 (MQ=255)                                tAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATgcg                                                                                                          >  2:249137/1‑150 (MQ=255)                                   cccctctcccctctATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCAt                                                                                                       >  2:466324/1‑150 (MQ=255)                                          cccctctATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGAt                                                                                                <  1:367594/150‑1 (MQ=255)                                             ctctATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAAt                                                                                                                                <  1:128516/115‑1 (MQ=255)                                             ctctATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAAt                                                                                                                                >  2:128516/1‑115 (MQ=255)                                               ccaTTTCACCCCGCCTAATTGTACGGTCGCCCGGACAGCATCACTAGCAATTCGGCGAGCACTTCCCATGCCCCATCCCAAGGCCTTGGTCATCTATTCACTATCGCGGGAATCCAATGACTCCTCATCGATGCGCATGCCGGATGCCgt                                                                                           <  2:255406/148‑1 (MQ=255)                                                 aTTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGgtgt                                                                                         <  1:249137/150‑1 (MQ=255)                                                  tttCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTa                                                                                        <  1:565352/150‑1 (MQ=255)                                                  tttCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTa                                                                                        >  1:501083/1‑150 (MQ=255)                                                                     tCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGc                                                                     <  2:501083/150‑1 (MQ=255)                                                                       ggTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGt                                                                   <  2:207526/150‑1 (MQ=255)                                                                       ggTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCACATGCCAAGGCCTTAGTAATCGATTCACTATGGCGGGAATCTAATGACTCCTCATGACTGCGCATGCCGGATGCGGTGGAAACACCAATGAACAGCTGCgc                                                                   >  2:96686/1‑149 (MQ=255)                                                                              gggACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGt                                                                   <  2:291460/143‑1 (MQ=255)                                                                              gggACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGt                                                                   >  1:291460/1‑143 (MQ=255)                                                                                     cATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGTCGCACCGGcgcgcg                                                     >  1:152231/1‑150 (MQ=255)                                                                                           tAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGTCGCACCGGCGCGCGAAAAcc                                               >  1:480083/1‑150 (MQ=255)                                                                                               aaTTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATtcgattcccgccatagtgaatcgatgaccaaggccttgg                                                                                                             <  1:589071‑M1/84‑40 (MQ=255)                                                                                               aaTTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATtcgattcccgccatagtgaatcgatgaccaaggccttgg                                                                                                             >  2:589071‑M1/1‑45 (MQ=255)                                                                                                aTTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATtcgattcccgccatagtgaatcgatgaccaaggccttggcatgg                                                                                                        >  1:567187‑M1/1‑44 (MQ=255)                                                                                                aTTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATtcgattcccgccatagtgaatcgatgaccaaggccttggcatgg                                                                                                        <  2:567187‑M1/88‑45 (MQ=255)                                                                                                                   tGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGTCGCACCGGCGCGCGAAAACCTCACCCGCACATCAATGTAGGTGc                       <  2:46825/150‑1 (MQ=255)                                                                                                                     ccccATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAaca                                                                                    >  2:319877/1‑87 (MQ=255)                                                                                                                     ccccATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAaca                                                                                    <  1:319877/87‑1 (MQ=255)                                                                                                                       ccATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAatgaccaaggccttggcatggggcataggccgtgctcgccgaat                                                                                 >  1:567187‑M2/1‑44 (MQ=255)                                                                                                                       ccATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAatgaccaaggccttggcatggggcataggccgtgctcgccgaat                                                                                 <  2:567187‑M2/88‑45 (MQ=255)                                                                                                                            ccAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAatgaccaaggccttggcatggggcataggccgtgctcgccgaatt                                                                                <  1:589071‑M2/84‑46 (MQ=255)                                                                                                                            ccAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAatgaccaaggccttggcatggggcataggccgtgctcgccgaatt                                                                                >  2:589071‑M2/1‑39 (MQ=255)                                                                                                                                        tCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGTCGCACCGGCGCGCGAAAACCTCACCCGCACATCAATGTAGGTGCCGTCATCGAGGAATTCTTCGt  >  1:578746/1‑150 (MQ=255)                                                                                                                                        tCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGTCGCACCGGCGCGCGAAAACCTCACCCGCACATCAATGTAGGTGCCGTCATCGAGGAATTCTTCGt  >  2:528022/1‑150 (MQ=255)                                                                                                                                           |                                                                                                                                                   TGACAGGAGTACATCCGTACTCTTTCCGCTCTAACCCCTCTCCCCTCTATTTCACGCGGACGAATTGTTCGGTAGCAGGGACAGCATCACTAGCAATTCGGCGAGCACGGCCTATGCCCCATGCCAAGGCCTTGGTCATCGATTCACTATGGCGGGAATCGAATGACTCCTCATGGATGCGCATGCCGGATGCGGTGTAAACACCGATGAACATCTGCGTCGCACCGGCGCGCGAAAACCTCACCCGCACATCAATGTAGGTGCCGTCATCGAGGAATTCTTCGT  >  NC_002947/4422646‑4422930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.