New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4450402 =	23 (1.000)	3 (0.140)	5/240	NT	11.1%	coding (432/474 nt)	nicA	nicotinate dehydrogenase subunit A
	?	NC_002947	4450420 =	26 (1.170)					coding (450/474 nt)	nicA	nicotinate dehydrogenase subunit A

CAGGCGGCCCAGTGTGGTTACTGCATGAACGGCATGATCATGACCGCCAAGGCCCTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGC  >  NC_002947/4450256‑4450548                                                                                                                                                   |                                                                                                                                                   ttgactgtaggtgtcacgcccttggccacagggcctgagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagtggttcatggctttctccgggtctcggcagcgc                                                                                                                                                 <  1:528098‑M1/4‑1 (MQ=255)              tcacgcccttggccacagggcctgagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagtggttcatggctttctccgggtctcggcaGCGCGCCGTGCGCcgcg                                                                                                                                    <  1:33358‑M1/17‑1 (MQ=255)                acgcccttggccacagggcctgagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagtggttcatggctttctccgggtctcggcaGCGCGCCGTGCGCCGCGCt                                                                                                                                  >  2:33358‑M1/132‑150 (MQ=255)                     cTGCAGGAACGGCATGAGCATGACCGCCAAGCACCTGCTCGATCGCAGTCCCGCGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCga                                                                                                                             <  2:506722/150‑1 (MQ=255)                      tGCATGAACGGCATGATCATGACCGCCAAGGCCCTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCgag                                                                                                                            >  1:542066/1‑150 (MQ=255)                        cATGACCGGCATGATCATGACCGCCAAGGCGCTGCTCGATCCCATTCCCGAGCCCAGCGCCGAACAGATTCGCAATGTGCTGTCCGCCAACCTGTGCCGCTGCGGCACCAACGTCGAGATCCTGCGCGCCGTGCGCCGCGCTGCCgaggg                                                                                                                          >  1:506722/1‑148 (MQ=255)                                 cATGATCATGACCGCCAAGGCCCTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGaaa                                                                                                                 >  1:426144/1‑150 (MQ=255)                                     aTCATGACCGCCAAGGCCCTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCa                                                                                                             >  1:57033/1‑150 (MQ=255)                                             cGCCAAGGCCCTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCAc                                                                                                     <  2:426144/150‑1 (MQ=255)                                             cGCCAAGGCCCTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCAc                                                                                                     >  1:282747/1‑150 (MQ=255)                                                      ccTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCTGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAg                                                                                            <  1:213649/150‑1 (MQ=255)                                                      ccTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAg                                                                                            <  2:542066/150‑1 (MQ=255)                                                      ccTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAg                                                                                            <  2:472242/150‑1 (MQ=255)                                                               tCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCCGc                                                                                   >  2:4/1‑150 (MQ=255)                                                               tCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGc                                                                                   >  1:268189/1‑150 (MQ=255)                                                                    ttCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCg                                                                                                                       <  1:124731/109‑1 (MQ=255)                                                                    ttCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCg                                                                                                                       >  2:124731/1‑109 (MQ=255)                                                                                      aaCAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTg                                                                                                                                                    <  1:414384/62‑1 (MQ=255)                                                                                      aaCAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTg                                                                                                                                                    >  2:414384/1‑62 (MQ=255)                                                                                        cAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGAGCAACTGCGGGCCAAGACCg                                                          <  2:551018/150‑1 (MQ=255)                                                                                                   tGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTg                                               >  1:400066/1‑150 (MQ=255)                                                                                                        tGTCCGTCAACCTGTGCCGCTGCGGCACCCACGTCGAACTCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGAGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGAtcgt                                          >  2:278355/1‑150 (MQ=255)                                                                                                            cGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTACGCGCCGTGCGCCGCGCTGCCGAGACCCGCAGAAAGCCATGAACCACTCACAACAGGTGCCCACCGGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGAc                                      >  1:194427/1‑150 (MQ=255)                                                                                                              ccAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCa                                    >  1:341536/1‑150 (MQ=255)                                                                                                                     ctaccccTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCAcc                             >  2:402657/7‑150 (MQ=255)                                                                                                                       gCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACGCGGAGAAAGCCATGAACCACTGCCAACAGGTGCCCAGCCGAGACGAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCAcccc                           >  2:146377/1‑150 (MQ=255)                                                                                                                                ctttctccgggtctcggcaGCGCGGCGCACGGCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAgg                  <  2:470916‑M1/131‑1 (MQ=255)                                                                                                                                      aCGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCtgt            <  2:57033/150‑1 (MQ=255)                                                                                                                                         tCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGc         >  2:503075/1‑150 (MQ=255)                                                                                                                                                gcaGCGCGGCGCACGGCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGAc                                                                             <  2:482647‑M1/72‑1 (MQ=255)                                                                                                                                                gcaGCGCGGCGCACGGCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGAc                                                                             >  1:482647‑M1/4‑75 (MQ=255)                                                                                                                                                gcaGCGCGGCGCACGGCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGc  <  1:345290‑M1/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CAGGCGGCCCAGTGTGGTTACTGCATGAACGGCATGATCATGACCGCCAAGGCCCTGCTCGATCGCATTCCCGAGCCCAGCGACGAACAGATTCGCAATGAGCTGTCCGCCAACCTGTGCCGCTGCGGCACCCACGTCGAAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGC  >  NC_002947/4450256‑4450548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.