New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 375999 =29 (1.250)3 (0.140) 3/232 NT 9.9% coding (43/771 nt) PP_0313 electron transfer flavoprotein subunit beta
?NC_002947 376055 = 28 (1.310)coding (99/771 nt) PP_0313 electron transfer flavoprotein subunit beta

TGACCTGTCGGTGATTGGCGACAGTTCGGCGATTCTCAAGGCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCAC  >  NC_002947/375850‑376148
                                                                                                                                                     |                                                                                                                                                     
aatcgcccagcacgcccagcacatcggccccggccggttgctccagcacgtcgaggtggtccaggcccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaac                                                                                                                                                       <  1:496861‑M1/1‑1 (MQ=255)
aatcgcccagcacgcccagcacatcggccccggccggctgctccagcacgtcgaggtggtccaggcccatgcccaggtaagcgcgcaaggcctcttccttcggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaac                                                                                                                                                       >  1:506230‑M1/150‑150 (MQ=255)
   cgcccagcacgcccagcacatcggccccggccggttgctccagcacgtcgaggtggtccaggcccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCa                                                                                                                                                    >  2:311910‑M1/147‑150 (MQ=255)
                  cGACAGTTCGGCGATTCTCAAGGCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAGAGAGATCGGCCTGGTTTGGATGGGGGCCCACGCCAGCTCCGGcccagcac                                                                                                                                     >  2:130710/1‑144 (MQ=255)
                       gTTCGGCGATTCTCAAGGCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTCCGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCcgccgc                                                                                                                                >  1:469668/1‑150 (MQ=255)
                          cGGCGATTCTCAAGGCGCTGATCGAGGCTGTGGACAACTATAACAGCGGCAGCCCGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACACCAGCTCCGGCCGCGCccgccgaacc                                                                                                                             >  2:21542/1‑146 (MQ=255)
                            gCGATTCTCAAGGCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGa                                                                                                                           >  1:404193/1‑150 (MQ=255)
                                   tcAAGGCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCcgccgcgccg                                                                                                                            >  1:174808/1‑142 (MQ=255)
                                   tcAAGGCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCcgccgcgccg                                                                                                                            <  2:174808/142‑1 (MQ=255)
                                       ggCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCTAGCAGGATGccc                                                                                                                <  2:469668/150‑1 (MQ=255)
                                        ctccagcacgtcgaggtggtccaggcccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCccg                                                                                                               <  1:397719‑M1/41‑1 (MQ=255)
                                         cgcTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCccgt                                                                                                              >  1:179596/1‑150 (MQ=255)
                                               tCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCATGGTTTCCATTGCTACCCACCCTAGCTTCGGCCGCGCCCGCCGCGCCGAGCAGGATGCccgtgccgtg                                                                                                        >  2:225617/1‑150 (MQ=255)
                                                 gAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGa                                                                                                      >  2:26658/1‑150 (MQ=255)
                                                      ggtggtccaggcccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTgg                                                                                                 >  1:530108‑M1/96‑150 (MQ=255)
                                                       gtgGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCAACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTggg                                                                                                >  1:512622/1‑150 (MQ=255)
                                                          gtccaggcccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGttt                                                                                             >  2:397719‑M1/92‑150 (MQ=255)
                                                          gACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGttt                                                                                             <  2:570389/150‑1 (MQ=255)
                                                             aaCTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCa                                                                                          >  1:427856/1‑150 (MQ=255)
                                                             aaCTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCAAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGAt                                                                                                                    <  1:282810/124‑1 (MQ=255)
                                                             aaCTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCAAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGAt                                                                                                                    >  2:282810/1‑124 (MQ=255)
                                                              aCTACCGCAGCGGCAGCCAGCGCCACACGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAg                                                                                         >  1:391504/1‑150 (MQ=255)
                                                               cTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAgc                                                                                        >  2:367382/1‑150 (MQ=255)
                                                                      aGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGctggctgg                                                                                 <  2:179596/150‑1 (MQ=255)
                                                                       gCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGCTTGCAGCTGGCTggg                                                                                >  2:430322/1‑150 (MQ=255)
                                                                                  cgcgACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCa                                                                     <  1:35740/150‑1 (MQ=255)
                                                                                   gcgACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAg                                                                    <  1:26658/150‑1 (MQ=255)
                                                                                             aTAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATg                                                          >  1:574910/1‑150 (MQ=255)
                                                                                                                tACGAAAGTGATCAGCCTGGTTTCCATTGGTCCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCCGGGTTTGCAGCTGGCTGGGGATAACTTGCAGATGGTGCCTGAGGGCACTCCACAggcaca                                       >  2:496861/1‑146 (MQ=255)
                                                                                                                           tCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCgg                                                       >  2:128642/1‑123 (MQ=255)
                                                                                                                           tCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCgg                                                       <  1:128642/123‑1 (MQ=255)
                                                                                                                                    tttCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTgg                   >  2:258608/1‑150 (MQ=255)
                                                                                                                                    tttCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTgg                   <  1:367382/150‑1 (MQ=255)
                                                                                                                                        cATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCAt               <  2:404193/150‑1 (MQ=255)
                                                                                                                                          ttGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTAAACTGGGCATgg             >  2:111210/1‑150 (MQ=255)
                                                                                                                                                 ccACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGa      >  1:92419/1‑150 (MQ=255)
                                                                                                                                                 ccACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATACACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGa      <  1:385893/150‑1 (MQ=255)
                                                                                                                                                     CCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGaccac  >  2:574910‑M1/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGACCTGTCGGTGATTGGCGACAGTTCGGCGATTCTCAAGGCGCTGATCGAGGCTGTGGACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCAC  >  NC_002947/375850‑376148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.