New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 543813	33 (1.430)	3 (0.140)	3/238	NT	10.6%	coding (2050/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
	?	NC_002947	= 543849	19 (0.860)					coding (2086/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'

GCGTTTCCATCGGTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTC  >  NC_002947/543670‑543961                                                                                                                                                |                                                                                                                                                     gCGTTTCCATCGGTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTtgt                                                                                                                                                <  2:56192/150‑1 (MQ=255) gCGTTTCCATCGGTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTtgt                                                                                                                                                >  1:69331/1‑150 (MQ=255)  cGTTTCCATCGGTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTTAGTATTAAGTGAACGAAATCGAGAGCCAGTACGCTTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTtgtg                                                                                                                                               <  1:141387/150‑1 (MQ=255)   gTTTCCATCGGTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTgg                                                                                                                                              <  1:410716/150‑1 (MQ=255)            ggTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGa                                                                                                                                                     >  2:277304/1‑134 (MQ=255)            ggTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGa                                                                                                                                                     <  1:277304/134‑1 (MQ=255)                gtAACGACTTCGTTATCCCGGACGTGAAAGCTCGCATGATGGGTAACGCTACCGATGAAGTGAAGGAAATTGAGAGCGCGTCCGCCTCCGGCCTGGTAACCCAGGGCGAGGAGTACAGCAAAGTCATCGACTTGTGGTTGACGGCGAacg                                                                                                                                 >  2:93605/2‑150 (MQ=255)                                 ccGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGccttggacacttcgtcgttcgccttcgaccacaagtcg                                                                                                                >  2:395010‑M1/1‑112 (MQ=255)                                  cGGACGAGAAAGCCCGCATCATGGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCGGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGccttggacacttcgtcgttcgccttcgaccacaagtcga                                                                                                               <  2:160696‑M1/150‑40 (MQ=255)                                  cGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGt                                                                                                                                             >  1:355450/1‑120 (MQ=255)                                  cGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGt                                                                                                                                             <  2:355450/120‑1 (MQ=255)                                  cGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcga                                                                                                               <  1:589891‑M2/150‑4 (MQ=255)                                       gagaAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg                                                                                                          <  1:584302/150‑1 (MQ=255)                                            aGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCaa                                                                                                     <  2:33881/150‑1 (MQ=255)                                                  catcatCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATTATGTCCAACctccc                                                                                               <  2:23638/150‑3 (MQ=255)                                                   ttcatcGGTAGCGTTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCg                                                                                              >  1:99713/2‑150 (MQ=255)                                                       tcGGTAGCGTTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAag                                                                                          <  2:99713/150‑1 (MQ=255)                                                           tAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGaa                                                                                      <  2:589891/150‑1 (MQ=255)                                                            aaCGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGACAAGTACTAGGAAGATATCGACCTCAGGGCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg                                                                                     <  1:383169/150‑1 (MQ=255)                                                             aCGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAgg                                                                                    <  2:69331/150‑1 (MQ=255)                                                                    cGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGccttggacacttcgtcgttcgccttcgaccacaagtcgatgaccttgttgtacttctcgccctgggttaccag                                                                             <  1:395010‑M1/150‑74 (MQ=255)                                                                              aagGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGc                                                                                                        >  2:614649/1‑113 (MQ=255)                                                                              aagGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGc                                                                                                        <  1:614649/113‑1 (MQ=255)                                                                                ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATgg                                                                                                         >  2:238863/1‑110 (MQ=255)                                                                                ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATgg                                                                                                         <  1:238863/110‑1 (MQ=255)                                                                                ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCaa                                                                 <  2:368512/150‑1 (MQ=255)                                                                                 gAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAg                                                                <  2:494418/150‑1 (MQ=255)                                                                                       gagaGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGcc                                                                                                       <  1:46489/105‑1 (MQ=255)                                                                                       gagaGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGcc                                                                                                       >  2:46489/1‑105 (MQ=255)                                                                                         gagCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGa                                                        <  1:289436/150‑1 (MQ=255)                                                                                             cAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAg                                                                                                                                        >  2:270006/1‑66 (MQ=255)                                                                                             cAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAg                                                                                                                                        <  1:270006/66‑1 (MQ=255)                                                                                                     cTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCtt                                            >  2:80985/1‑150 (MQ=255)                                                                                                            cTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtactggctctcgatttccttcacttcatcg                                     <  1:395010‑M2/150‑78 (MQ=255)                                                                                                               gTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg                                                                                     <  1:189485/99‑1 (MQ=255)                                                                                                               gTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg                                                                                     >  2:189485/1‑99 (MQ=255)                                                                                                                     cAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACatg                            >  2:185444/1‑150 (MQ=255)                                                                                                                              aaGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGAc                   >  2:433133/1‑150 (MQ=255)                                                                                                                                    aacaaGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg                                                                                                          <  1:14447/57‑1 (MQ=255)                                                                                                                                    aacaaGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg                                                                                                          >  2:14447/1‑57 (MQ=255)                                                                                                                                              tCGccttggacacttcgtcgttcgccttcgaccacaagtcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtactggctctcgatttccttcacttcatcggtagcgttaccgatgatgcgggctttctcgtccg   <  1:589891‑M1/150‑148 (MQ=255)                                                                                                                                              tCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtaccggctctcgatttccttcacttcatcggtagcgttacccatgatgcgggctttctcgtccg   <  2:160696‑M2/150‑112 (MQ=255)                                                                                                                                               cGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtactggctctcgatttccttcacttcatcggtagcgttaccgatgatgcgggctttctcgtccgg  >  2:395010‑M2/1‑38 (MQ=255)                                                                                                                                                |                                                                                                                                                     GCGTTTCCATCGGTGTTAACGACTTCGTTATCCCGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTC  >  NC_002947/543670‑543961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.