New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 543813 | 33 (1.430) | 3 (0.140) | 3/238 | NT | 10.6% | coding (2050/4200 nt) | rpoC | DNA‑directed RNA polymerase subunit beta' |
? | NC_002947 | = 543849 | 19 (0.860) | coding (2086/4200 nt) | rpoC | DNA‑directed RNA polymerase subunit beta' |
CGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTCAGC > NC_002947/543703‑543981 | cGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcga < 1:589891‑M2/150‑4 (MQ=255) gagaAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg < 1:584302/150‑1 (MQ=255) aGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCaa < 2:33881/150‑1 (MQ=255) catcatCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATTATGTCCAACctccc < 2:23638/150‑3 (MQ=255) ttcatcGGTAGCGTTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCg > 1:99713/2‑150 (MQ=255) tcGGTAGCGTTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAag < 2:99713/150‑1 (MQ=255) tAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGaa < 2:589891/150‑1 (MQ=255) aaCGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGACAAGTACTAGGAAGATATCGACCTCAGGGCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg < 1:383169/150‑1 (MQ=255) aCGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAgg < 2:69331/150‑1 (MQ=255) aagGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGc < 1:614649/113‑1 (MQ=255) aagGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGc > 2:614649/1‑113 (MQ=255) ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATgg < 1:238863/110‑1 (MQ=255) ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATgg > 2:238863/1‑110 (MQ=255) ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCaa < 2:368512/150‑1 (MQ=255) gAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAg < 2:494418/150‑1 (MQ=255) gagaGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGcc < 1:46489/105‑1 (MQ=255) gagaGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGcc > 2:46489/1‑105 (MQ=255) gagCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGa < 1:289436/150‑1 (MQ=255) cTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCtt > 2:80985/1‑150 (MQ=255) cTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtactggctctcgatttccttcacttcatcg < 1:395010‑M2/150‑78 (MQ=255) gTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg < 1:189485/99‑1 (MQ=255) gTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg > 2:189485/1‑99 (MQ=255) cAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACatg > 2:185444/1‑150 (MQ=255) aaGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGAc > 2:433133/1‑150 (MQ=255) aacaaGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg > 2:14447/1‑57 (MQ=255) aacaaGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg < 1:14447/57‑1 (MQ=255) tCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtaccggctctcgatttccttcacttcatcggtagcgttacccatgatgcgggctttctcgtccg < 2:160696‑M2/150‑112 (MQ=255) cGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtactggctctcgatttccttcacttcatcggtagcgttaccgatgatgcgggctttctcgtccgg > 2:395010‑M2/1‑38 (MQ=255) gTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCa < 1:93605/150‑1 (MQ=255) cGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACCCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGa < 2:221835/150‑1 (MQ=255) cGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTc < 1:433133/150‑1 (MQ=255) acgacgAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTCAGc < 1:559743/150‑1 (MQ=255) | CGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTCAGC > NC_002947/543703‑543981 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |