New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	595628 =	12 (0.520)	3 (0.130)	3/242	NT	19.6%	coding (529/1266 nt)	PP_0506	ABC transporter permease
	?	NC_002947	595675 =	13 (0.580)					coding (482/1266 nt)	PP_0506	ABC transporter permease

CCGGCGCCACGGGCGGGTACGCCGTTGTGCCAGTCGATATGGATCGCCTCCATTCCGCCCAGGCTGATATGCAGGGTGCGGTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGAGCACTACCTCGAACGGGTCGTTGGCAAACTCACGCCCCTGGCTCAGTTGCAGATGC  >  NC_002947/595486‑595770                                                                                                                                               |                                                                                                                                               ccGGCGCCACGGGCGGGTACGCCGTTGTGCCAGTCGATATGGATCGCCTCCATTCCGCCCAGGCCGATATGCAGGGTGCGGTCGACGGGGGTGCCGGCGCGCTTGAGACTGCGGACCACGGTAAACGGCTTGTCGGCGTGCTTGACCAgg                                                                                                                                         >  1:6019/1‑149 (MQ=255)          cgggcgggTACGCCGTTGTGCCAGTCGATATGGATCGCCTCCATTCCGCCCAGGCTGATATGCAGGGTGCGGTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCg                                                                                                                                <  2:559928/150‑1 (MQ=255)                ggTACGCCGTTGTGCCAGTCGATATGGATCGCCTCCATTCCGCCCAGGCTGATATGCAGGGTGCGGTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGa                                                                                                                                              <  1:139488/130‑1 (MQ=255)                ggTACGCCGTTGTGCCAGTCGATATGGATCGCCTCCATTCCGCCCAGGCTGATATGCAGGGTGCGGTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGa                                                                                                                                              >  2:139488/1‑130 (MQ=255)                                        gccgccagcatctgcaactgagccaggggcgtgagtttgccaacgacccgttcgaggtagtgctcggcgctgaagtggccgaggcattgcactacaagctgggTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCa                                                                                                  >  1:355860‑M1/104‑150 (MQ=255)                                                 tCCATTCCGCCCAGGCTGATATGCAGGGTGCGGTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACACAGcaag                                                                                         >  1:434439/1‑147 (MQ=255)                                                    aTTCCGCCCAGGCTGATATGCAGGGTGCGGTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAg                                                                                      >  1:215972/1‑150 (MQ=255)                                                                                ggTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGa                                                          <  1:297575/150‑1 (MQ=255)                                                                                         gggTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGAGCACTACCt                                                 >  1:112197/1‑150 (MQ=255)                                                                                            tGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGAc                                                                                                                                        <  2:79620/60‑1 (MQ=255)                                                                                            tGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGAc                                                                                                                                        >  1:79620/1‑60 (MQ=255)                                                                                                 gTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGAGCACTACCTCGAACggg                                         <  2:150004/150‑1 (MQ=255)                                                                                                 gTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGAGCACTACCTCGAACggg                                         <  1:189984/150‑1 (MQ=255)                                                                                                      ctcggcgctgaagtggccgaggcattgcactacaagctgggTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCa                                                                                              >  1:565425‑M1/42‑92 (MQ=255)                                                                                                      ctcggcgctgaagtggccgaggcattgcactacaagctgggTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCa                                                                                              <  2:565425‑M1/51‑1 (MQ=255)                                                                                                                      aCGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGAGCACTACCTCGAACGGGTCGTTGGCAAACTCACGccct                    <  2:215972/150‑2 (MQ=255)                                                                                                                                        tcgtGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGAGCACTACCTCGAACGGGTCGTTGGCAAACTCACGCCCCTGGCTCAGTTGCAGATGc  <  1:286127/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               CCGGCGCCACGGGCGGGTACGCCGTTGTGCCAGTCGATATGGATCGCCTCCATTCCGCCCAGGCTGATATGCAGGGTGCGGTCGACGGGGGTGCCGGTGCGCTTGAGTACGCCGACCACGGTAAACGGCTTGTCGTCGTGCTTGACCAGACTGATTGCGGCCACGCCGTGGGCCAGCACCAGCTTGTCACCCAGCTTGTAGTGCAATGCCTCGGCCACTTCAGCGCCGAGCACTACCTCGAACGGGTCGTTGGCAAACTCACGCCCCTGGCTCAGTTGCAGATGC  >  NC_002947/595486‑595770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.