New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	673262 =	32 (1.380)	3 (0.140)	3/238	NT	9.2%	coding (261/777 nt)	PP_0574	LuxR family transcriptional regulator
	?	NC_002947	673328 =	29 (1.320)					coding (195/777 nt)	PP_0574	LuxR family transcriptional regulator

GGTTGCGCTGGCGCTCCAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGTTGAGAG  >  NC_002947/673114‑673411                                                                                                                                                     |                                                                                                                                                      gttggtcattgtcgaacagctgagtgaattcctcgaaaccaagggctatgcctgcgttacagccctctcaaccgacgaagccatcgagcactatgtggcagacccgcccatcggcttgctcatctgttacctgcacatgcccgatcggGa                                                                                                                                                      <  2:127600‑M1/2‑1 (MQ=255) accggtcattgtcgaacagctgagtgaattcctcgaaaccaagggctatgcctgcgttacagccctctcaaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGa                                                                                                                                                      <  1:47396‑M1/2‑1 (MQ=255)  gTTGCGCTGGCGCTCCAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGCTGAAGGCCTGTTTCTCGGCACGCCCTGTCAACatgnt                                                                                                                                                     <  1:147232/150‑1 (MQ=255)  ccggtcattgtcgaacagctgagtgaattcctcgaaaccaagggctatgcctgcgttacagccctctcaaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGAt                                                                                                                                                     >  1:203358‑M1/148‑150 (MQ=255)  ccggtcattgtcgaacagctgagtgaattcctcgaaaccaagggctatgcctgcgttacagccctctcaaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGAt                                                                                                                                                     >  1:317460‑M1/148‑150 (MQ=255)                 cAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTgcg                                                                                                                                      <  1:348409/150‑1 (MQ=255)                 cAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTgcg                                                                                                                                      >  1:43194/1‑150 (MQ=255)                             ttcttGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGtt                                                                                                                          <  2:466549/150‑1 (MQ=255)                                    cGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATTATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTcc                                                                                                                   >  1:127600/1‑150 (MQ=255)                                    cGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTcc                                                                                                                   <  1:378280/150‑1 (MQ=255)                                     gacggacgCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCt                                                                                                                  <  2:180165/150‑1 (MQ=255)                                                 ccAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCa                                                                                                      <  1:172842/150‑1 (MQ=255)                                                   agcagTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCAcc                                                                                                    >  2:144691/1‑150 (MQ=255)                                                    ctgcgttacagccctctcaaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCa                                                                                                   <  1:358246‑M1/53‑1 (MQ=255)                                                          catcaAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGa                                                                                             >  2:95459/1‑150 (MQ=255)                                                           atcaAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGAt                                                                                            >  2:36943/1‑150 (MQ=255)                                                           atcaAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGAt                                                                                            <  2:228486/150‑1 (MQ=255)                                                           atcaAGGTCCAGCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGAt                                                                                            <  2:429942/150‑1 (MQ=255)                                                                 gTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATc                                                                                      >  1:94259/1‑150 (MQ=255)                                                                         cgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCgg                                                                              >  2:264172‑M1/77‑150 (MQ=255)                                                                            tCTGTTAGGATTCGGCAAAACCTTTGCGTATCGCCCGGATCAAGTCCTCTTTCTAGGCACGCCCTGTCAACATGATGACTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTGCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCa                                                                           <  2:262151/150‑1 (MQ=255)                                                                                gtagtaATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCAtgtg                                                                       >  2:437257/1‑150 (MQ=255)                                                                                   atcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAg                                                                    >  2:358246‑M1/67‑150 (MQ=255)                                                                                      aTCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCgg                                                                              >  1:486750/1‑137 (MQ=255)                                                                                      aTCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCgg                                                                              <  2:486750/137‑1 (MQ=255)                                                                                       tCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTca                                                                <  1:95459/150‑1 (MQ=255)                                                                                            aaaaCCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGAt                                                           <  1:36943/150‑1 (MQ=255)                                                                                            aaaaCCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGAt                                                           <  1:437257/150‑1 (MQ=255)                                                                                             aaaCCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATg                                                          <  1:144691/150‑1 (MQ=255)                                                                                                          tCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATgg                                             <  2:283573/150‑1 (MQ=255)                                                                                                                    cAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGc                                   <  2:94259/150‑1 (MQ=255)                                                                                                                        tCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCcaca                               >  1:161463/1‑150 (MQ=255)                                                                                                                         ccTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATg                                              <  2:112064/134‑1 (MQ=255)                                                                                                                         ccTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATg                                              >  1:112064/1‑134 (MQ=255)                                                                                                                          cTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATa                             >  1:391101/1‑150 (MQ=255)                                                                                                                           tGTTCCGCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGGGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAg                            <  2:280048/150‑1 (MQ=255)                                                                                                                            gTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGt                           <  2:419504/150‑1 (MQ=255)                                                                                                                            gTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTAACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGt                           >  1:340833/1‑150 (MQ=255)                                                                                                                                  cGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGa                     <  2:43194/150‑1 (MQ=255)                                                                                                                                   ggCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGAt                    >  1:389392/1‑150 (MQ=255)                                                                                                                                                aaCATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTcaca                                                              >  2:302110/1‑95 (MQ=255)                                                                                                                                                aaCATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTcaca                                                              <  1:302110/95‑1 (MQ=255)                                                                                                                                                aaCATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGtt       <  2:391101/150‑1 (MQ=255)                                                                                                                                                aaCATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGtt       >  1:506987/1‑150 (MQ=255)                                                                                                                                                     GATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGTTGagag  <  2:277906‑M1/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGTTGCGCTGGCGCTCCAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGTTGAGAG  >  NC_002947/673114‑673411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.