New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1362413 | 30 (1.300) | 4 (0.180) | 3/234 | NT | 11.6% | coding (797/1347 nt) | phoQ | sensor protein |
? | NC_002947 | = 1362442 | 33 (1.530) | coding (826/1347 nt) | phoQ | sensor protein |
CCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCC > NC_002947/1362282‑1362562 | ccGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGgcgcgcgcga > 1:265254/1‑150 (MQ=255) ccGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGgcgagcgcgg > 2:231350/1‑149 (MQ=255) ccGTCTGTTGCGCAGTGAGCGTGAGCAGAGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGt < 2:469465‑M2/150‑2 (MQ=255) gTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgc < 2:457358‑M2/150‑4 (MQ=255) cTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctg > 2:92751‑M2/1‑145 (MQ=255) tGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgc > 1:395398‑M1/1‑115 (MQ=255) ttGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaa < 2:395398‑M1/150‑38 (MQ=255) tGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCaaa < 1:466189/150‑1 (MQ=255) cgcAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGc < 1:220007/150‑1 (MQ=255) gagcgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATc < 2:599203/150‑1 (MQ=255) gtgagcAGCGCACGCGCTACCGTGATTCGCAGAACGACGTTTCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAgc < 2:206047/150‑1 (MQ=255) agcGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGa < 2:168452/150‑1 (MQ=255) ccGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGa > 1:262824/1‑150 (MQ=255) gCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaa < 2:359111‑M1/109‑38 (MQ=255) gCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaa > 1:359111‑M1/1‑72 (MQ=255) gacCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAAcgc > 2:484010/1‑150 (MQ=255) ccTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACgcgc > 1:542001/1‑150 (MQ=255) cTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGcc > 1:232050/1‑150 (MQ=255) cTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACAAGCTGAAACGCTcc > 2:352286/1‑150 (MQ=255) acaGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTgc < 2:268303/150‑1 (MQ=255) tGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGTGATGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAaga < 1:469465/150‑1 (MQ=255) gACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTgg < 2:262824/150‑1 (MQ=255) cTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGTCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTa < 1:486056/150‑1 (MQ=255) gCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGc < 1:457358/150‑1 (MQ=255) tgctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGcccaa < 1:484010/150‑4 (MQ=255) tgctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCcaca > 2:507038/1‑150 (MQ=255) tgctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCcaca < 1:522221/150‑1 (MQ=255) gctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAg < 1:506724/150‑1 (MQ=255) ctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGc < 1:507038/150‑1 (MQ=255) tGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGcc > 1:559941/1‑150 (MQ=255) aaGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCAAGCCTGCGCAAGCGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGtt < 1:352286/150‑1 (MQ=255) aGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTg > 1:485080/1‑150 (MQ=255) gCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGCTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGc > 2:355880/1‑150 (MQ=255) cTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGtt > 1:210895/1‑147 (MQ=255) cTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGtt < 2:210895/147‑1 (MQ=255) ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaa < 2:395398‑M2/150‑114 (MQ=255) ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagc < 2:359111‑M2/109‑73 (MQ=255) ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagc > 1:359111‑M2/1‑37 (MQ=255) ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTc > 2:394229/1‑150 (MQ=255) ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGCGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTGGCTc > 1:322904/1‑150 (MQ=255) gcagcaGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaaca > 1:395398‑M2/1‑35 (MQ=255) cagcacccgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaacag > 2:92751‑M1/1‑5 (MQ=255) gcacccgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaacagac < 2:457358‑M1/150‑148 (MQ=255) cagcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag < 1:81546/63‑1 (MQ=255) cagcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag > 2:81546/1‑63 (MQ=255) agcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGcc < 2:569728/150‑1 (MQ=255) acccgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgctctgctcacgctcactgcgcaacagacgg < 2:469465‑M1/150‑150 (MQ=255) | CCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCC > NC_002947/1362282‑1362562 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |