New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1362413	30 (1.300)	4 (0.180)	3/234	NT	11.6%	coding (797/1347 nt)	phoQ	sensor protein
	?	NC_002947	= 1362442	33 (1.530)					coding (826/1347 nt)	phoQ	sensor protein

CCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCCTGTGCAGCACCTTGGCCAAG  >  NC_002947/1362294‑1362582                                                                                                                                                     |                                                                                                                                             ccGTCTGTTGCGCAGTGAGCGTGAGCAGAGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGt                                                                                                                                             <  2:469465‑M2/150‑2 (MQ=255)   gTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgc                                                                                                                                           <  2:457358‑M2/150‑4 (MQ=255)     cTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctg                                                                                                                                         >  2:92751‑M2/1‑145 (MQ=255)         tGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCaaa                                                                                                                                     <  1:466189/150‑1 (MQ=255)           cgcAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGc                                                                                                                                   <  1:220007/150‑1 (MQ=255)                 gagcgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATc                                                                                                                             <  2:599203/150‑1 (MQ=255)                     gtgagcAGCGCACGCGCTACCGTGATTCGCAGAACGACGTTTCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAgc                                                                                                                         <  2:206047/150‑1 (MQ=255)                           agcGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGa                                                                                                                   <  2:168452/150‑1 (MQ=255)                                        ccGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGa                                                                                                      >  1:262824/1‑150 (MQ=255)                                                        gacCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAAcgc                                                                                      >  2:484010/1‑150 (MQ=255)                                                          ccTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACgcgc                                                                                    >  1:542001/1‑150 (MQ=255)                                                           cTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGcc                                                                                   >  1:232050/1‑150 (MQ=255)                                                           cTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACAAGCTGAAACGCTcc                                                                                   >  2:352286/1‑150 (MQ=255)                                                                  acaGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTgc                                                                            <  2:268303/150‑1 (MQ=255)                                                                        tGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGTGATGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAaga                                                                      <  1:469465/150‑1 (MQ=255)                                                                            gACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTgg                                                                  <  2:262824/150‑1 (MQ=255)                                                                                   cTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGTCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTa                                                           <  1:486056/150‑1 (MQ=255)                                                                                      gCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGc                                                        <  1:457358/150‑1 (MQ=255)                                                                                          tgctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGcccaa                                                    <  1:484010/150‑4 (MQ=255)                                                                                          tgctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCcaca                                                    <  1:522221/150‑1 (MQ=255)                                                                                          tgctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCcaca                                                    >  2:507038/1‑150 (MQ=255)                                                                                           gctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAg                                                   <  1:506724/150‑1 (MQ=255)                                                                                            ctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGc                                                  <  1:507038/150‑1 (MQ=255)                                                                                                          tGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGcc                                    >  1:559941/1‑150 (MQ=255)                                                                                                             aaGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCAAGCCTGCGCAAGCGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGtt                                 <  1:352286/150‑1 (MQ=255)                                                                                                              aGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTg                                >  1:485080/1‑150 (MQ=255)                                                                                                               gCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGCTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGc                               >  2:355880/1‑150 (MQ=255)                                                                                                                cTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGtt                                 >  1:210895/1‑147 (MQ=255)                                                                                                                cTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGtt                                 <  2:210895/147‑1 (MQ=255)                                                                                                                 ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaa                             <  2:395398‑M2/150‑114 (MQ=255)                                                                                                                 ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagc                                                                      <  2:359111‑M2/109‑73 (MQ=255)                                                                                                                 ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagc                                                                      >  1:359111‑M2/1‑37 (MQ=255)                                                                                                                 ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTc                             >  2:394229/1‑150 (MQ=255)                                                                                                                 ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGCGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTGGCTc                             >  1:322904/1‑150 (MQ=255)                                                                                                                   gcagcaGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaaca                           >  1:395398‑M2/1‑35 (MQ=255)                                                                                                                       cagcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                                              <  1:81546/63‑1 (MQ=255)                                                                                                                       cagcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                                              >  2:81546/1‑63 (MQ=255)                                                                                                                        agcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGcc                      <  2:569728/150‑1 (MQ=255)                                                                                                                              gcggcgAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCCTGTgca                <  1:355880/150‑1 (MQ=255)                                                                                                                                      cgcgagcAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCCTGTGCAGCACCTTg        <  2:322904/150‑1 (MQ=255)                                                                                                                                       gcgagcAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCCTGTGCAGCACCTTgg       <  2:542001/150‑1 (MQ=255)                                                                                                                                            cAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCCTGTGCAGCACCTTGGCCAAg  <  1:394229/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             CCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGCCTGTGCAGCACCTTGGCCAAG  >  NC_002947/1362294‑1362582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.