New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1837562 =	30 (1.300)	5 (0.220)	5/242	NT	14.7%	coding (139/672 nt)	PP_1642	hypothetical protein
	?	NC_002947	1837587 =	29 (1.300)					coding (164/672 nt)	PP_1642	hypothetical protein

TCTGAGCCCATGCGTGATTACCAGTGGTTGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAG  >  NC_002947/1837415‑1837705                                                                                                                                                    |                                                                                                                                                 tgagcttgcccaggtggcggataatgcgctcatcctgcatcaaccgctccagatgctcggcgcccatcagcaccactttctccgggtcgaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgaGcc                                                                                                                                                <  2:454003‑M1/3‑1 (MQ=255)  gagcttgcccaggtggcggataatgcgctcatcctgcatcaaccgctccagatgctcggcgcccatcagcaccactttctccgggtcgaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgaGccc                                                                                                                                               <  1:115110‑M1/4‑1 (MQ=255)                     ccAGTGGTTGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCggg                                                                                                                           >  1:156118/1‑150 (MQ=255)                      cAGTGGTTGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCgggg                                                                                                                          <  2:598881/150‑1 (MQ=255)                             tGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGAAGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGATCACGc                                                                                                                   >  1:282161/1‑150 (MQ=255)                                  gAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGc                                                                                                              >  1:569411/1‑150 (MQ=255)                                          ccggAACCGCTTGGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCGGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGa                                                                                                      <  2:525057/147‑1 (MQ=255)                                          ccTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGa                                                                                                      >  1:7733/1‑150 (MQ=255)                                                        gTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCgg                                                                                        >  2:115110/1‑150 (MQ=255)                                                         ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCaa                                                                                                >  2:288072/1‑141 (MQ=255)                                                         ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCaa                                                                                                <  1:288072/141‑1 (MQ=255)                                                         ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGc                                                                                       >  2:213182/1‑150 (MQ=255)                                                           cGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGt                                                                                     <  1:162584/150‑1 (MQ=255)                                                              cccAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCg                                                                                  >  1:177813/1‑150 (MQ=255)                                                                cAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAg                                                                                >  1:524915/1‑150 (MQ=255)                                                                   gcgcTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAg                                                                             <  1:272296/150‑1 (MQ=255)                                                                             cTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTg                                                                   <  2:569411/150‑1 (MQ=255)                                                                                   tGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCg                                                             >  1:176176/1‑150 (MQ=255)                                                                                      cGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGAcc                                                          >  1:242939/1‑150 (MQ=255)                                                                                      cGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGAcc                                                          <  2:176176/150‑1 (MQ=255)                                                                                          gCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCgg                                                                                                                            <  2:95000/80‑1 (MQ=255)                                                                                          gCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCgg                                                                                                                            >  1:95000/1‑80 (MQ=255)                                                                                                   gCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAgtggt                                             <  2:524915/150‑1 (MQ=255)                                                                                                         gcAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGAt                                       <  2:24439/150‑1 (MQ=255)                                                                                                                  ctaCATCAGTTACGACCGCTACCTGTCGACATTGGCGCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGTCCCGGAGAAAGTGGTGCTGATGTGCGCCGa                              <  2:282161/148‑1 (MQ=255)                                                                                                                        cacttggcatccaccaggctgtgcttgaGCCCCGCGCG‑GAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTc                                                              <  2:463095‑M1/84‑1 (MQ=255)                                                                                                                        cacttggcatccaccaggctgtgcttgaGCCCCGCGCG‑GAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTc                                                              >  1:463095‑M1/29‑112 (MQ=255)                                                                                                                          gTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTgg                      >  1:4122/1‑150 (MQ=255)                                                                                                                                  cGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGGGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTg              >  2:481775/1‑150 (MQ=255)                                                                                                                                    accaggctgtgcttgaGCCCTGCGCGTGTTC‑CGCGCGGGGc                                                                                                                         >  2:282466‑M1/17‑41 (MQ=255)                                                                                                                                    accaggctgtgcttgaGCCCTGCGCGTGTTC‑CGCGCGGGGc                                                                                                                         <  1:282466‑M1/25‑1 (MQ=255)                                                                                                                                    accaggctgtgcttgaGCCCCGCGCG‑GAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGAt            <  2:270587‑M1/134‑1 (MQ=255)                                                                                                                                       ccTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCa         <  2:177813/150‑1 (MQ=255)                                                                                                                                           tCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGAAGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGAt     <  1:345980/150‑1 (MQ=255)                                                                                                                                             gACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAGGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGa   <  2:156118/150‑1 (MQ=255)                                                                                                                                              aCATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAg  >  2:504857/1‑150 (MQ=255)                                                                                                                                              aCATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAg  >  1:454003/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TCTGAGCCCATGCGTGATTACCAGTGGTTGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAG  >  NC_002947/1837415‑1837705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.