New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1837562 =30 (1.300)5 (0.220) 5/242 NT 14.7% coding (139/672 nt) PP_1642 hypothetical protein
?NC_002947 1837587 = 29 (1.300)coding (164/672 nt) PP_1642 hypothetical protein

TGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAAGA  >  NC_002947/1837443‑1837736
                                                                                                                                                 |                                                                                                                                                     
tGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGAAGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGATCACGc                                                                                                                                                  >  1:282161/1‑150 (MQ=255)
     gAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGc                                                                                                                                             >  1:569411/1‑150 (MQ=255)
           atcaaccgctccagatgctcggcgcccatcagcaccactttctccgggtcgaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgagccctgcgcgtgttccgcgcggggcTCAAGCACAGCCtggt                                                                                                                                        <  2:270587‑M2/16‑1 (MQ=255)
             ccggAACCGCTTGGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCGGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGa                                                                                                                                     <  2:525057/147‑1 (MQ=255)
             ccTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGa                                                                                                                                     >  1:7733/1‑150 (MQ=255)
                           gTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCgg                                                                                                                       >  2:115110/1‑150 (MQ=255)
                            ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCaa                                                                                                                               >  2:288072/1‑141 (MQ=255)
                            ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCaa                                                                                                                               <  1:288072/141‑1 (MQ=255)
                            ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGc                                                                                                                      >  2:213182/1‑150 (MQ=255)
                              cGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGt                                                                                                                    <  1:162584/150‑1 (MQ=255)
                                 cccAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCg                                                                                                                 >  1:177813/1‑150 (MQ=255)
                                   cAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAg                                                                                                               >  1:524915/1‑150 (MQ=255)
                                      gcgcTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAg                                                                                                            <  1:272296/150‑1 (MQ=255)
                                                cTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTg                                                                                                  <  2:569411/150‑1 (MQ=255)
                                                      tGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCg                                                                                            >  1:176176/1‑150 (MQ=255)
                                                         cGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGAcc                                                                                         >  1:242939/1‑150 (MQ=255)
                                                         cGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGAcc                                                                                         <  2:176176/150‑1 (MQ=255)
                                                             gaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgagccctgcgcgtgttccgcgcggggcTCAAGCACAGCCTGGTGGATGCCAAGTg                                                                                                                            >  1:463095‑M2/85‑112 (MQ=255)
                                                             gaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgagccctgcgcgtgttccgcgcggggcTCAAGCACAGCCTGGTGGATGCCAAGTg                                                                                                                            <  2:463095‑M2/28‑1 (MQ=255)
                                                                      gCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAgtggt                                                                            <  2:524915/150‑1 (MQ=255)
                                                                            gcAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGAt                                                                      <  2:24439/150‑1 (MQ=255)
                                                                                     ctaCATCAGTTACGACCGCTACCTGTCGACATTGGCGCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGTCCCGGAGAAAGTGGTGCTGATGTGCGCCGa                                                             <  2:282161/148‑1 (MQ=255)
                                                                                           cacttggcatccaccaggctgtgcttgaGCCCCGCGCGGAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTc                                                                                             <  2:463095‑M1/84‑1 (MQ=255)
                                                                                           cacttggcatccaccaggctgtgcttgaGCCCCGCGCGGAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTc                                                                                             >  1:463095‑M1/29‑112 (MQ=255)
                                                                                             gTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTgg                                                     >  1:4122/1‑150 (MQ=255)
                                                                                                     cGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGGGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTg                                             >  2:481775/1‑150 (MQ=255)
                                                                                                       accaggctgtgcttgaGCCCCGCGCGGAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGAt                                           <  2:270587‑M1/134‑1 (MQ=255)
                                                                                                          ccTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCa                                        <  2:177813/150‑1 (MQ=255)
                                                                                                              tCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGAAGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGAt                                    <  1:345980/150‑1 (MQ=255)
                                                                                                                gACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAGGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGa                                  <  2:156118/150‑1 (MQ=255)
                                                                                                                 aCATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAg                                 >  2:504857/1‑150 (MQ=255)
                                                                                                                 aCATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAg                                 >  1:454003/1‑150 (MQ=255)
                                                                                                                        gccccgcgcggaacacgcgcagggcTCAAGCACAGCCtggt                                                                                                                                        >  2:282466‑M2/26‑41 (MQ=255)
                                                                                                                        gccccgcgcggaacacgcgcagggcTCAAGCACAGCCtggt                                                                                                                                        <  1:282466‑M2/16‑1 (MQ=255)
                                                                                                                          CTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGACGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATc                        <  1:440761‑M1/150‑1 (MQ=255)
                                                                                                                               cgTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCa                   >  1:166674/1‑150 (MQ=255)
                                                                                                                                gtgtTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCAc                  <  2:4122/150‑1 (MQ=255)
                                                                                                                                    tCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTgg              <  2:242939/150‑1 (MQ=255)
                                                                                                                                         cgcgGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGCCGGAGGGATGCAGGATGAGCGCATTATCCGCCACCTGGGCaa          >  1:6147/1‑150 (MQ=255)
                                                                                                                                             gggcTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTc      <  1:115110‑M2/146‑1 (MQ=255)
                                                                                                                                              ggcTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCa     <  2:454003‑M2/147‑1 (MQ=255)
                                                                                                                                                 tCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAaga  >  1:270433/1‑150 (MQ=255)
                                                                                                                                                 tCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAaga  <  1:153351/150‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                     
TGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTCCGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAAGA  >  NC_002947/1837443‑1837736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.