New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1837562 = | 30 (1.300) | 5 (0.220) | 5/242 | NT | 14.7% | coding (139/672 nt) | PP_1642 | hypothetical protein |
? | NC_002947 | 1837587 = | 29 (1.300) | coding (164/672 nt) | PP_1642 | hypothetical protein |
TGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAAGA > NC_002947/1837443‑1837736 | tGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGAAGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGATCACGc > 1:282161/1‑150 (MQ=255) gAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGc > 1:569411/1‑150 (MQ=255) atcaaccgctccagatgctcggcgcccatcagcaccactttctccgggtcgaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgagccctgcgcgtgttccgcgcggggcTCAAGCACAGCCtggt < 2:270587‑M2/16‑1 (MQ=255) ccggAACCGCTTGGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCGGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGa < 2:525057/147‑1 (MQ=255) ccTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGa > 1:7733/1‑150 (MQ=255) gTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCgg > 2:115110/1‑150 (MQ=255) ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCaa > 2:288072/1‑141 (MQ=255) ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCaa < 1:288072/141‑1 (MQ=255) ttCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGc > 2:213182/1‑150 (MQ=255) cGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGt < 1:162584/150‑1 (MQ=255) cccAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCg > 1:177813/1‑150 (MQ=255) cAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAg > 1:524915/1‑150 (MQ=255) gcgcTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAg < 1:272296/150‑1 (MQ=255) cTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTg < 2:569411/150‑1 (MQ=255) tGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCg > 1:176176/1‑150 (MQ=255) cGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGAcc > 1:242939/1‑150 (MQ=255) cGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGAcc < 2:176176/150‑1 (MQ=255) gaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgagccctgcgcgtgttccgcgcggggcTCAAGCACAGCCTGGTGGATGCCAAGTg > 1:463095‑M2/85‑112 (MQ=255) gaagccaaagaacacctgctcgaacgccggccacttggcatccaccaggctgtgcttgagccctgcgcgtgttccgcgcggggcTCAAGCACAGCCTGGTGGATGCCAAGTg < 2:463095‑M2/28‑1 (MQ=255) gCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAgtggt < 2:524915/150‑1 (MQ=255) gcAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGAt < 2:24439/150‑1 (MQ=255) ctaCATCAGTTACGACCGCTACCTGTCGACATTGGCGCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGTCCCGGAGAAAGTGGTGCTGATGTGCGCCGa < 2:282161/148‑1 (MQ=255) cacttggcatccaccaggctgtgcttgaGCCCCGCGCG‑GAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTc < 2:463095‑M1/84‑1 (MQ=255) cacttggcatccaccaggctgtgcttgaGCCCCGCGCG‑GAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTc > 1:463095‑M1/29‑112 (MQ=255) gTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTgg > 1:4122/1‑150 (MQ=255) cGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGGGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTg > 2:481775/1‑150 (MQ=255) accaggctgtgcttgaGCCCCGCGCG‑GAACACGCGCAGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGAt < 2:270587‑M1/134‑1 (MQ=255) ccTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCa < 2:177813/150‑1 (MQ=255) tCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGAAGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGAt < 1:345980/150‑1 (MQ=255) gACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAGGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGa < 2:156118/150‑1 (MQ=255) aCATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAg > 2:504857/1‑150 (MQ=255) aCATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAg > 1:454003/1‑150 (MQ=255) gccccgcgcggaacacgcgcagggcTCAAGCACAGCCtggt > 2:282466‑M2/26‑41 (MQ=255) gccccgcgcggaacacgcgcagggcTCAAGCACAGCCtggt < 1:282466‑M2/16‑1 (MQ=255) CTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGACGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATc < 1:440761‑M1/150‑1 (MQ=255) cgTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCa > 1:166674/1‑150 (MQ=255) gtgtTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCAc < 2:4122/150‑1 (MQ=255) tC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTgg < 2:242939/150‑1 (MQ=255) cgcgGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGCCGGAGGGATGCAGGATGAGCGCATTATCCGCCACCTGGGCaa > 1:6147/1‑150 (MQ=255) gggcTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTc < 1:115110‑M2/146‑1 (MQ=255) ggcTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCa < 2:454003‑M2/147‑1 (MQ=255) tCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAaga > 1:270433/1‑150 (MQ=255) tCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAaga < 1:153351/150‑1 (MQ=255) | TGCATGAGTATTGCCTGAACCGCTTTGGTTCGGCCCAGGCGCTGGAGGCTTTCCTGCCGCAGCCGCGCACGCCGGCGCAACTGCGCGACATCAGTGACGACCGCTACCTGTCGACATTGGCCCTGCGCGTGTTC‑CGCGCGGGGCTCAAGCACAGCCTGGTGGATGCCAAGTGGCCGGCGTTCGAGCAGGTGTTCTTTGGCTTCGACCCGGAGAAAGTGGTGCTGATGGGCGCCGAGCATCTGGAGCGGTTGATGCAGGATGAGCGCATTATCCGCCACCTGGGCAAGCTCAAGA > NC_002947/1837443‑1837736 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |