New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1978556 =	31 (1.340)	3 (0.140)	3/238	NT	8.8%	coding (2177/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1978592 =	33 (1.500)					coding (2213/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase

ATCATCATCGACGGTGGCCAGATGGGCGGCGGCGAAGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGC  >  NC_002947/1978414‑1978697                                                                                                                                               |                                                                                                                                                 atcatcatcGACGGTGGCCAGATGGGCGGCGGCGAAGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCact                                                                                                                                           >  2:334967/1‑148 (MQ=255)  agcgcgccggagtccagcagcttccagcccagctcgcgggcaatcggcccggcgaccgtgcccttgcccgagccgcttggtccgtcgatggtgataaccggtgccattgaattcacgacttgccctcttctgccacgcgaatcccccctt                                                                                                                                          <  1:24189‑M1/9‑5 (MQ=255)       atcGACGGTGGCCAGATGGGCGGCGGCGAAGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTg                                                                                                                                     >  2:66808/1‑150 (MQ=255)        tcGACGGTGGCCAGATGGGCGGCGGCGAAGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTgg                                                                                                                                    >  2:200821/1‑150 (MQ=255)                                    aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt                                                                                                     <  2:424901/150‑1 (MQ=255)                                    aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt                                                                                                     <  1:265131/150‑1 (MQ=255)                                    aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt                                                                                                     <  1:96541/150‑1 (MQ=255)                                                 ggTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGTGTGGCAGAAGAGGGc                                                                                        >  2:428125/1‑150 (MQ=255)                                                 ggTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGc                                                                                        <  1:66808/150‑1 (MQ=255)                                                       caccGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCg                                                                                  >  1:5575/1‑150 (MQ=255)                                                        accGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGt                                                                                 >  1:361536/1‑150 (MQ=255)                                                         ccGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTg                                                                                <  1:87068/150‑1 (MQ=255)                                                           gCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGaa                                                                              <  1:359442/150‑1 (MQ=255)                                                                gCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCaa                                                                         <  2:227005/150‑1 (MQ=255)                                                                       gagccgcttggtccgtcgatggtgataaccggtgccattgaattcacgacttgccctcttctgccacgcgaaTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTc                                                                                                         <  2:536326‑M1/39‑1 (MQ=255)                                                                       gagccgcttggtccgtcgatggtgataaccggtgccatagaattcacgacttgccctcttctgccacgcgaaTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTc                                                                                                         >  1:536326‑M1/73‑111 (MQ=255)                                                                        cTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg                                                                 >  2:221843/1‑150 (MQ=255)                                                                                   cTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCAt                                                      <  1:462506/150‑1 (MQ=255)                                                                                    ttCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATc                                                     >  2:25008/1‑150 (MQ=255)                                                                                      cGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGa                                                   <  1:371793/150‑1 (MQ=255)                                                                                                cAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGc                                         <  2:5575/150‑1 (MQ=255)                                                                                                      gcCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAAtt                                                                            <  1:462370/109‑1 (MQ=255)                                                                                                      gcCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAAtt                                                                            >  2:462370/1‑109 (MQ=255)                                                                                                             cGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAgg                            <  2:361536/150‑1 (MQ=255)                                                                                                              gCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAggg                           >  1:73787/1‑150 (MQ=255)                                                                                                              gCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAggg                           <  1:221843/150‑1 (MQ=255)                                                                                                               cATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGc                          >  2:589623/1‑150 (MQ=255)                                                                                                               cATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGc                          >  1:190652/1‑150 (MQ=255)                                                                                                                           cgcCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg                                                                 >  2:75481/1‑99 (MQ=255)                                                                                                                           cgcCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg                                                                 <  1:75481/99‑1 (MQ=255)                                                                                                                             cctcttctgccacgcgaaTCCCCA‑CTTC‑‑GGCGCACAGCGCCAGGAAGTTGGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCt            <  1:434796‑M1/132‑1 (MQ=255)                                                                                                                                 cGTCGCCACCCAGTTCACCAACTTCCTGCCGCGGTGCTCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGAtt        <  1:290222/150‑1 (MQ=255)                                                                                                                                   tCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTc                    >  2:180913/1‑136 (MQ=255)                                                                                                                                   tCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTc                    <  1:180913/136‑1 (MQ=255)                                                                                                                                       cACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCcgc  >  1:225137/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                 ATCATCATCGACGGTGGCCAGATGGGCGGCGGCGAAGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGC  >  NC_002947/1978414‑1978697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.