New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1978556 =	31 (1.340)	3 (0.140)	3/238	NT	8.8%	coding (2177/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1978592 =	33 (1.500)					coding (2213/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase

AGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGT  >  NC_002947/1978449‑1978734                                                                                                                                                   |                                                                                                                                               aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt                                                                                                                                          <  1:96541/150‑1 (MQ=255) aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt                                                                                                                                          <  2:424901/150‑1 (MQ=255) aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt                                                                                                                                          <  1:265131/150‑1 (MQ=255)              ggTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGTGTGGCAGAAGAGGGc                                                                                                                             >  2:428125/1‑150 (MQ=255)              ggTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGc                                                                                                                             <  1:66808/150‑1 (MQ=255)               agcccggcgaccgtgcccttgcccgagccgcttggtccgtcgatggtgataaccggtgccattgaattcacgacttgccctcttctgccacgcgaatccccaacttcctggcgctgtgcgccgaagtggggaTTCGCGTGGCAGAAGAgg                                                                                                                               <  1:434796‑M2/18‑1 (MQ=255)                    caccGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCg                                                                                                                       >  1:5575/1‑150 (MQ=255)                     accGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGt                                                                                                                      >  1:361536/1‑150 (MQ=255)                      ccGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTg                                                                                                                     <  1:87068/150‑1 (MQ=255)                        gCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGaa                                                                                                                   <  1:359442/150‑1 (MQ=255)                             gCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCaa                                                                                                              <  2:227005/150‑1 (MQ=255)                                    gagccgcttggtccgtcgatggtgataaccggtgccattgaattcacgacttgccctcttctgccacgcgaaTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTc                                                                                                                                              <  2:536326‑M1/39‑1 (MQ=255)                                    gagccgcttggtccgtcgatggtgataaccggtgccatagaattcacgacttgccctcttctgccacgcgaaTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTc                                                                                                                                              >  1:536326‑M1/73‑111 (MQ=255)                                     cTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg                                                                                                      >  2:221843/1‑150 (MQ=255)                                                cTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCAt                                                                                           <  1:462506/150‑1 (MQ=255)                                                 ttCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATc                                                                                          >  2:25008/1‑150 (MQ=255)                                                   cGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGa                                                                                        <  1:371793/150‑1 (MQ=255)                                                             cAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGc                                                                              <  2:5575/150‑1 (MQ=255)                                                                   gcCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAAtt                                                                                                                 >  2:462370/1‑109 (MQ=255)                                                                   gcCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAAtt                                                                                                                 <  1:462370/109‑1 (MQ=255)                                                                          cGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAgg                                                                 <  2:361536/150‑1 (MQ=255)                                                                           gCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAggg                                                                >  1:73787/1‑150 (MQ=255)                                                                           gCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAggg                                                                <  1:221843/150‑1 (MQ=255)                                                                            cATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGc                                                               >  1:190652/1‑150 (MQ=255)                                                                            cATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGc                                                               >  2:589623/1‑150 (MQ=255)                                                                                        cgcCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg                                                                                                      >  2:75481/1‑99 (MQ=255)                                                                                        cgcCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg                                                                                                      <  1:75481/99‑1 (MQ=255)                                                                                          cctcttctgccacgcgaaTCCCCA‑CTTC‑‑GGCGCACAGCGCCAGGAAGTTGGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCt                                                 <  1:434796‑M1/132‑1 (MQ=255)                                                                                              cGTCGCCACCCAGTTCACCAACTTCCTGCCGCGGTGCTCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGAtt                                             <  1:290222/150‑1 (MQ=255)                                                                                                tCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTc                                                         >  2:180913/1‑136 (MQ=255)                                                                                                tCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTc                                                         <  1:180913/136‑1 (MQ=255)                                                                                                    cACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCcgc                                       >  1:225137/1‑150 (MQ=255)                                                                                                            gaatccccacttcggcgcacagcgccaggaagttggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCTATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTc                                                                         >  1:536326‑M2/40‑111 (MQ=255)                                                                                                            gaatccccacttcggcgcacagcgccaggaagttggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTc                                                                         <  2:536326‑M2/72‑1 (MQ=255)                                                                                                               CCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAgctgggctg                            <  2:226586‑M1/150‑1 (MQ=255)                                                                                                                CAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAgctgggctgg                           <  2:371415‑M1/150‑1 (MQ=255)                                                                                                                CAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAgctgggctgg                           <  1:215093‑M1/150‑1 (MQ=255)                                                                                                                        tGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCa                                                                                               <  2:146062/74‑1 (MQ=255)                                                                                                                        tGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCa                                                                                               >  1:146062/1‑74 (MQ=255)                                                                                                                         ggCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGctgctg                  <  1:428125/150‑1 (MQ=255)                                                                                                                              tgtgCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTc             >  1:368953/1‑150 (MQ=255)                                                                                                                                  cgcC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGgc         <  2:190652/150‑1 (MQ=255)                                                                                                                                          aaggggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCCGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCt    <  1:24189‑M2/141‑1 (MQ=255)                                                                                                                                           gT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGt  <  2:225137/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               AGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGT  >  NC_002947/1978449‑1978734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.