New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2302573 = | 31 (1.340) | 3 (0.140) | 3/234 | NT | 12.2% | coding (242/267 nt) | PP_2026 | hypothetical protein |
? | NC_002947 | 2302663 = | 14 (0.650) | coding (152/267 nt) | PP_2026 | hypothetical protein |
GCGACACAAGGCCGCTCCTACAAAGGCTGCAATCAGCGCAGGGTGATTTCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGGTGTAGAAGGGGCGGGCTGTCAGGATTGCAGGAGGATCGGGGACGATCT > NC_002947/2302516‑2302807 | caccctccagttgatggccggcatcgaagactcgctggacgagtacatctgcgccaaTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTg > 2:575276‑M1/58‑150 (MQ=255) gACACAAGGCCGCTCCTACAAAGGCTGCAATCAGCGCAGGGTGATTTCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGgc > 2:167892/1‑150 (MQ=255) acaAGGCCGCTCCTACAAAGGCTGCAATCAGCGCAGGGTGATTTCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCa < 1:148429/150‑1 (MQ=255) cAGCGCAGGGTGATTTCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATg < 1:249002/150‑1 (MQ=255) tttCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTc > 2:572593/1‑133 (MQ=255) tttCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTc < 1:572593/133‑1 (MQ=255) tttCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACt > 2:119998/1‑150 (MQ=255) caatgccggtgaacccggtatcaacatgctggtcaacgcagtgcatcacgtgcagatgaccagagcgctggccgagttgctgctacaccggcaTTGGCGCAGATGTACTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGgtg > 2:575276‑M2/94‑150 (MQ=255) tgccggtgaacccggtatcaacatgctggtcaacgcagtgcatcacgtgcagatgaccagagcgctggccgagttgctgctacaccggcaTTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTgg > 2:411206‑M2/91‑150 (MQ=255) tCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGa > 2:414172/1‑150 (MQ=255) tGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGgtg < 1:321425/150‑1 (MQ=255) gcatcacgtgcagatgaccagagcgctggccgagttgctgctacaccggcaTTGGCGCAGATGTACTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGgtg < 1:575276‑M2/99‑1 (MQ=255) ccAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGGTGTAGAAGGGGCGGGCTGTCAGGa < 1:414172/150‑1 (MQ=255) cAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGGTGTAGAAGGGGCGGGCTGTCAGGAt > 1:300865/1‑150 (MQ=255) gTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATg < 1:532082/118‑1 (MQ=255) gTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATg > 2:532082/1‑118 (MQ=255) ttGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGGTGTAGAAGGGGCGGGCTGTCAGGATTGCagga < 1:119998/150‑1 (MQ=255) ccGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCaa < 1:39046/88‑1 (MQ=255) ccGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCaa > 2:39046/1‑88 (MQ=255) cggcaTTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGGGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGGTGTAGAAGGGTCGGGCAGACAGGATTGCAGGAGGATCAGCGCCgatgt > 2:192065‑M2/6‑148 (MQ=255) | GCGACACAAGGCCGCTCCTACAAAGGCTGCAATCAGCGCAGGGTGATTTCCCCGGTCTGCCGGTGTAGCAGCAACTCGGCCAGCGCTCTGGTCATCTGCACGTGATGCACTGCGTTGACCAGCATGTTGATACCGGGTTCACCGGCATTGGCGCAGATGTATTCGTCCAGCGAGTCTTCGATGCCGGCCATCAACTGGAGGGTGTGGGTCAGGGCGTCAACCGAAGGCGTGTCCTGGTTGATGGTGTAGAAGGGGCGGGCTGTCAGGATTGCAGGAGGATCGGGGACGATCT > NC_002947/2302516‑2302807 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |