New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2907209 | 28 (1.210) | 3 (0.140) | 3/238 | NT | 9.6% | coding (217/1359 nt) | PP_2558 | outer membrane efflux protein |
? | NC_002947 | = 2907231 | 30 (1.360) | coding (195/1359 nt) | PP_2558 | outer membrane efflux protein |
CATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATCAG > NC_002947/2907084‑2907380 | cATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgc < 1:525445‑M2/150‑3 (MQ=255) aTCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcc > 2:281164‑M2/1‑147 (MQ=255) ttgAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGgcg > 2:578125/1‑150 (MQ=255) ttgAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACATGGTTTAAGGAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGgcg < 2:457811/150‑1 (MQ=255) gAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGcgcg < 2:309849/150‑1 (MQ=255) aacaacGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGGCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCgg > 2:92117/1‑150 (MQ=255) aCGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGtttt > 1:394596/1‑150 (MQ=255) ccTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACgg > 1:404537/1‑150 (MQ=255) ccTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACgg < 2:525445/150‑1 (MQ=255) tCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCgg > 2:444936/1‑150 (MQ=255) tCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCAATGGAGCCCCTCTCATGATCGGCTGGTGTTTTATGCACGGGAGCGCGGTAGATc > 2:529607/1‑150 (MQ=255) cATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCt < 1:92117/150‑1 (MQ=255) aTTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTg > 1:309207/1‑150 (MQ=255) ccTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACt < 1:401162/150‑1 (MQ=255) tGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGc > 2:610347/1‑150 (MQ=255) tGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTcc < 2:390865/150‑1 (MQ=255) aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCACCAGGTCCCAGGCTTGCTTCAg > 2:79046/1‑150 (MQ=255) aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAg > 1:458404/1‑150 (MQ=255) aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAg < 1:529607/150‑1 (MQ=255) cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCTGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTTGATCGGGCCTTTGTTTTGCCACAGGTCCCCGGCTTTCTTCAGGTCCAt > 2:79590/1‑150 (MQ=255) cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctactgcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgtgcgcctgcgccagccgtt < 2:399772‑M2/150‑108 (MQ=255) cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCAt > 2:225403/1‑150 (MQ=255) tGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATg < 2:441225/150‑1 (MQ=255) tGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATg > 2:152159/1‑150 (MQ=255) gTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGCTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGc > 1:587386/1‑150 (MQ=255) aGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGTCGCTGGTCCCTTTGTCGCTACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTgg < 1:444936/150‑1 (MQ=255) gTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGc < 1:578125/150‑1 (MQ=255) aGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCt < 1:303892/150‑1 (MQ=255) ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgt > 2:303438‑M2/1‑31 (MQ=255) ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgt < 1:303438‑M2/120‑90 (MQ=255) ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTg < 2:394596/150‑1 (MQ=255) aGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTTTTTTTTTTTTTCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACgg > 2:610727/1‑150 (MQ=255) gTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCACCAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAAc < 1:13654/150‑1 (MQ=255) ggCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAgg < 1:565871/150‑1 (MQ=255) gcagcaGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGCCCTGTACGGCAACTCCCAGCAGGc > 2:450543/1‑150 (MQ=255) ccggccTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATc < 1:610347/150‑1 (MQ=255) ggccTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATCAg < 1:152159/150‑1 (MQ=255) | CATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATCAG > NC_002947/2907084‑2907380 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |