New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4993002	29 (1.250)	3 (0.140)	3/236	NT	9.8%	coding (911/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
	?	NC_002947	= 4993024	28 (1.280)					coding (933/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha

TGGCGTGGGTTGCGGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCGATCGCCCGCCTGAAGCAGCACCTGATCAAGATCGGCCACTGGTCCGAGGAAGAACACCAGGCCGTCACGGCCGAGC  >  NC_002947/4992880‑4993172                                                                                                                                                 |                                                                                                                                                     tggcgtggGTTGCGGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGcactc                                                                                                                                                 >  2:562802‑M2/1‑145 (MQ=255)               gTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGAcc                                                                                                                                   >  2:414361/1‑150 (MQ=255)                  ttGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCt                                                                                                                                >  1:482217/1‑150 (MQ=255)                      ttCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCaa                                                                                                                            >  1:270857/1‑150 (MQ=255)                      ttCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCaa                                                                                                                            <  1:400741/150‑1 (MQ=255)                      ttCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCaa                                                                                                                            >  1:536221/1‑150 (MQ=255)                      ttCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCaa                                                                                                                            >  1:530073/1‑150 (MQ=255)                      ttCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACATCGGACGACCCCTCCaa                                                                                                                            <  2:314562/150‑1 (MQ=255)                                        cAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGgac                                                                                                                                       <  2:437983/121‑1 (MQ=255)                                        cAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGgac                                                                                                                                       >  1:437983/1‑121 (MQ=255)                                           cGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTg                                                                                                       >  1:175079/1‑150 (MQ=255)                                           cGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTg                                                                                                       >  1:175184/1‑150 (MQ=255)                                             aCTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTCATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGa                                                                                                     <  1:414361/150‑1 (MQ=255)                                              cTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAg                                                                                                    <  2:487768/150‑1 (MQ=255)                                                 cgtcgCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCa                                                                                                 <  2:175079/150‑1 (MQ=255)                                                 cgtcgCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCa                                                                                                 <  2:175184/150‑1 (MQ=255)                                                       cGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACt                                                                                                        >  1:533727/1‑137 (MQ=255)                                                       cGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACt                                                                                                        <  2:533727/137‑1 (MQ=255)                                                       cGTGTACGCTGCCTAGCGCTGGGCGGCCGAGCGCCCCCGCCGCGGCCTGGGCCCACGCCTGATCGTGTGGGTCACCTACCGTGCCGGCCCCCACTCGACGTCGGACGTCCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTcccc                                                                                           <  2:189981/150‑1 (MQ=255)                                                            aCGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTAGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTgg                                                                                      <  2:500646/150‑1 (MQ=255)                                                                tGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCTGCTGGGTGa                                                                                  >  1:450977/1‑150 (MQ=255)                                                                   cTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCATGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGAACCCTCGCAGTACCGCCCTGCCGACGACGGGAGCCACTGGCCGCTGGGTGAccc                                                                               >  1:146812/1‑150 (MQ=255)                                                                    tCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCg                                                                              >  1:30782/1‑150 (MQ=255)                                                                                         gcccgccGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCGATCGCCCGCCTGAAGCAGCAc                                                         <  2:30782/150‑1 (MQ=255)                                                                                         gcccgccGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCCCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTCGGTGACTCGATCGCCCGCCTGAAgaagcag                                                         <  2:181155/150‑2 (MQ=255)                                                                                                        ggCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCGATCGCCCGCCTGAAGCAGCACCTGATCAAGATCGGc                                          <  2:482217/150‑1 (MQ=255)                                                                                                          cccAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGcactcgatcaggcttgggcccaggccgcggcgggcgcgctcggccgcccagcgcgaggcagcgtacacggcgacgaagtcgttgccgtcaacccgcagcgaagcaatacc                                        <  2:291253‑M2/150‑111 (MQ=255)                                                                                                                  tGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTgg                                                                                      <  2:396822/96‑1 (MQ=255)                                                                                                                  tGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTgg                                                                                      >  1:396822/1‑96 (MQ=255)                                                                                                                   gATCGAGTGGGTCACCTACCGTGCCGGCCCGcactcgatcaggcttgggcccaggccgcggcgggcgcgctcggccgcccagcgcgaggcagcgtacacggcgacgaagtcgttgccgtcaacc                                                         <  2:404096‑M2/124‑94 (MQ=255)                                                                                                                   gATCGAGTGGGTCACCTACCGTGCCGGCCCGcactcgatcaggcttgggcccaggccgcggcgggcgcgctcggccgcccagcgcgaggcagcgtacacggcgacgaagtcgttgccgtcaacc                                                         >  1:404096‑M2/1‑31 (MQ=255)                                                                                                                   gATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCGATCGCCCGCCTGAAGCAGCACCTGATCAAGATCGGCCACTGGTCCGa                               <  1:49249/150‑1 (MQ=255)                                                                                                                                              cccGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCGATCGCCCGCCTGAAGCAGCACCTGATCAAGATCGGCCACTGGTCCGAGGAAGAACACCAGGCCGTCACGGCCGa    <  2:536221/150‑1 (MQ=255)                                                                                                                                                cGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCGATCGCCCGCCTGAAGCAGCACCTGATCAAGATCGGCCACTGGTCCGAGGAAGAACACCAGGCCGTCACGGCCGAGc  >  1:559762/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TGGCGTGGGTTGCGGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGGGTCACCTACCGTGCCGGCCCGCACTCGACGTCGGACGACCCCTCCAAGTACCGCCCTGCCGACGACTGGAGCCACTTCCCGCTGGGTGACCCGATCGCCCGCCTGAAGCAGCACCTGATCAAGATCGGCCACTGGTCCGAGGAAGAACACCAGGCCGTCACGGCCGAGC  >  NC_002947/4992880‑4993172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.