New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5162643	19 (0.820)	5 (0.270)	5/198	NT	24.4%	intergenic (+118/+83)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	= 5162675	16 (0.870)					intergenic (+150/+51)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

GCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTA  >  NC_002947/5162526‑5162818                                                                                                                                                      |                                                                                                                                                gCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTAc                                                                                                                                                 >  1:549626/1‑150 (MQ=255) gCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCCGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTAc                                                                                                                                                 <  2:425988/150‑1 (MQ=255)     cacCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgt                                                                                                                                             >  1:455329‑M2/1‑146 (MQ=255)          tgctctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGGCCGCTCCCCCAGTATCACCCCAGACCTTTGGAACTGTTCGGTAActgtgggag                                                                                                                                        <  2:612804‑M2/150‑10 (MQ=255)            ctctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcg                                                                                                                                      >  2:549626‑M2/1‑139 (MQ=255)             tctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgg                                                                                                                                     >  2:148448‑M2/1‑138 (MQ=255)                       cTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgc                                                                                                                           >  2:263801‑M2/1‑128 (MQ=255)                         gAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCCAAGTATCACCACCGAACCTGAGACCTGTCCTGTACttttgggagcgggcaagcccgcga                                                                                                                         >  2:595818‑M2/1‑126 (MQ=255)                                                ccGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCACCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCtgat                                                                                                  >  1:580064/1‑150 (MQ=255)                                                 cGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaa                                                                                                                                 <  2:173177‑M2/118‑17 (MQ=255)                                                 cGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCACACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaa                                                                                                                                 >  1:173177‑M2/1‑102 (MQ=255)                                                      tttCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCa                                                                                            <  2:292298/150‑1 (MQ=255)                                                           cGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTCGCCGGTTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTAGGAGCGGGGAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCt                                                                                       >  1:296450/1‑150 (MQ=255)                                                                        cTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATcac                                                                          >  2:370775/1‑150 (MQ=255)                                                                         tgtgtgAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGCAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATcaca                                                                         <  2:294168/150‑1 (MQ=255)                                                                          gtgtgAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGCACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGACGTAACCAGCGCCTGATGAATCAGCACTTGCGCAGAATCacac                                                                        >  2:128406/1‑150 (MQ=38)                                                                                            ccTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGCAACAGGCGCCTGATGAATCAGCGCTTGCGCCGAATCCAGCTATCAATCGAATAccccc                                                      >  2:497410/1‑149 (MQ=38)                                                                                             cTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTTGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGc                                                     >  2:260198/1‑150 (MQ=255)                                                                                                     gCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACg                                             >  2:42566/1‑150 (MQ=255)                                                                                                      cTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGa                                            <  2:580064/150‑1 (MQ=255)                                                                                                            cGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaagaggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagag                                      <  1:90786‑M2/150‑108 (MQ=255)                                                                                                            cGCTCCCACAGTATAACCACAGACCTGGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCaa                                      <  1:128406/150‑1 (MQ=255)                                                                                                               tCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaa                                                                                             >  1:137653‑M2/1‑40 (MQ=255)                                                                                                               tCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaa                                                                                             <  2:137653‑M2/92‑53 (MQ=255)                                                                                                                  cacaGTATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagagcagggg                                <  1:337791‑M2/150‑114 (MQ=255)                                                                                                                   acaGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGaa                                                                              >  2:425797/1‑103 (MQ=255)                                                                                                                   acaGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGaa                                                                              <  1:425797/103‑1 (MQ=255)                                                                                                                       tATCACCACAGACCTTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaagaggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcagagcagggtgttgc                           >  2:90786‑M2/1‑32 (MQ=255)                                                                                                                                             tgtgCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAgg                                                                                                          <  2:198719/49‑1 (MQ=255)                                                                                                                                             tgtgCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAgg                                                                                                          >  1:198719/1‑49 (MQ=255)                                                                                                                                                ccTGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTa  <  1:612804/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                GCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTA  >  NC_002947/5162526‑5162818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.