New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1251009 =	18 (0.780)	3 (0.140)	3/234	NT	16.7%	coding (268/549 nt)	PP_1093	electron transport complex protein
	?	NC_002947	1251060 =	13 (0.600)					coding (217/549 nt)	PP_1093	electron transport complex protein

GTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTCAGCCAGCGTTCGGGT  >  NC_002947/1250911‑1251201                                                                                                                                                      |                                                                                                                                              gTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCACCTGCAGGCAACTGGCCaa                                                                                                                                               >  2:266796/1‑150 (MQ=255) gTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCaa                                                                                                                                               <  1:590087/150‑1 (MQ=255) gTGCCTTCCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGCGGTCTGATAGTAGTGATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCaa                                                                                                                                               <  2:324584/150‑1 (MQ=255) actgatggggtgcctgcaccaactgttgctggcgccactgcgtaaacacatggccagctgggcctatgtactggctagcctgttgctgctggcagcctTGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGTCaa                                                                                                                                               >  1:150200‑M1/99‑150 (MQ=255)       tGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGc                                                                                                                                         <  2:231483/150‑1 (MQ=255)                gcgcCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCaa                                                                                                                                <  2:201128/150‑1 (MQ=255)                                      aGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGcc                                                                                                          <  1:21190/150‑1 (MQ=255)                                           gtggtCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCt                                                                                                     >  2:221004/1‑150 (MQ=255)                                            tggtCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTg                                                                                                    >  1:301382/1‑150 (MQ=255)                                                                       aacaaTGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTg                                                                                 <  1:504992/142‑1 (MQ=255)                                                                       aacaaTGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTg                                                                                 >  2:504992/1‑142 (MQ=255)                                                                                          ccAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCAcc                                                      <  1:521131/150‑1 (MQ=255)                                                                                              ggCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCAt                                                  <  1:148428/150‑1 (MQ=255)                                                                                                 aaTGGCCAGTGGTAGCAGACAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAg                                               >  2:257681/1‑150 (MQ=255)                                                                                                  ttgaccagttgcctgcagttggccctgcgggcctggctgctaccactggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGt                                              >  1:150200‑M2/53‑150 (MQ=255)                                                                                                     GCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCAtgt                                                                                             <  1:439565‑M1/100‑1 (MQ=255)                                                                                                     GCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCAtgt                                                                                             >  2:439565‑M1/1‑100 (MQ=255)                                                                                                       cagttgcctgcagttggccctgcgggcctggctgctaccactggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGcc                                                                                                 <  2:605443‑M2/47‑1 (MQ=255)                                                                                                       cagttgcctgcagttggccctgcgggcctggctgctaccactggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGcc                                                                                                 >  1:605443‑M2/48‑94 (MQ=255)                                                                                                          TGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCa                                      >  2:408192‑M1/1‑150 (MQ=255)                                                                                                                  gcCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGa                              <  2:301382/150‑1 (MQ=255)                                                                                                                     aGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATgg                           <  2:175059/150‑1 (MQ=255)                                                                                                                                      tGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTcagccagc          >  2:355010/1‑150 (MQ=255)                                                                                                                                              actggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCTGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTCAGCCAGCGTTCGGGt  <  1:221004‑M2/142‑1 (MQ=255)                                                                                                                                                tggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGt                                                                   <  2:230869‑M2/77‑1 (MQ=255)                                                                                                                                                tggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGt                                                                   >  1:230869‑M2/7‑83 (MQ=255)                                                                                                                                                      |                                                                                                                                              GTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTCAGCCAGCGTTCGGGT  >  NC_002947/1250911‑1251201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.