New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1745822 =24 (1.040)5 (0.230) 5/240 NT 17.5% intergenic (‑20/+299) PP_1543/PP_1544 hypothetical protein/hypothetical protein
?NC_002947 1745847 = 24 (1.080)intergenic (‑45/+274) PP_1543/PP_1544 hypothetical protein/hypothetical protein

TGCCCTTGCAGGGCTCAAAGTCTTCGAGGTAGACGCTGATCGGGTCCAGGCCTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCACTTCGGATGCT  >  NC_002947/1745700‑1745978
                                                                                                                                                     |                                                                                                                                   
gtgctcttcttaacatcactgtcgcggtgataccaagccatacatacctccttctgtattgagccccaactaaatcactgcaggcaaatggccacaatgctgtgattttaaacagccaccatGCCGCCCTCCGTGGCCGGATGCGGCAtg                                                                                                                                   >  1:18362‑M1/123‑150 (MQ=255)
                 aaGTCTTCGAGGTAGACGCTGATCGGGTCCAGGCCTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATca                                                                                                                  <  2:392867/150‑1 (MQ=255)
                    tCTTCGAGGTAGACGCTGATCGGGTCCAGGCCTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAg                                                                                                               >  2:523748/1‑150 (MQ=255)
                     tgtcgcggtgataccaagccatacatacctccttctgtattgagccccaactaaatcacggcaggcaaatggccacaatgctgtgattttaaacagccaccatgccgccctccgtggccggatgcggcATGGTGGCTGTTTAAAAt                                                                                                                    >  2:322825‑M2/129‑146 (MQ=255)
                     tgtcgcggtgataccaagccatacatacctccttctgtattgagccccaactaaatcacggcaggcaaatggccacaatgctgtgattttaaacagccaccatgccgccctccgtggccggatgcggcATGGTGGCTGTTTAAAAt                                                                                                                    <  1:322825‑M2/18‑1 (MQ=255)
                                  gCTGATCGGGTCCAGGCCTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCAttt                                                                                                 <  2:88721/150‑1 (MQ=255)
                                   cTGATCGGGTCCAGGCCTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTtg                                                                                                >  1:204148/1‑150 (MQ=255)
                                               aGGCCTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGAtt                                                                                    >  1:217482/1‑150 (MQ=255)
                                                  ccTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAg                                                                                 <  2:541810/150‑1 (MQ=255)
                                                   cTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGt                                                                                <  1:518743/150‑1 (MQ=255)
                                                    ttCGGCGTCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCACTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGtt                                                                               <  1:26232/150‑1 (MQ=255)
                                                             aGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCaa                                                                      <  1:167423/150‑1 (MQ=255)
                                                                 aTCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCACTTGCCTGCCGTGATTTAGTTGGGGCTCAATACa                                                                  >  1:37175/1‑150 (MQ=255)
                                                                  tCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGGGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAg                                                                 <  1:198279/150‑1 (MQ=255)
                                                                     gcagcTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAag                                                              >  1:20297/1‑150 (MQ=255)
                                                                       agcTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAagga                                                            >  1:359483/1‑150 (MQ=255)
                                                                           tGGTGACAGTGGCGGCCCCGCCTTACATTGCGGTGCTCCAGGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGgta                                                        <  2:162635/150‑1 (MQ=255)
                                                                           tGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGgta                                                        <  2:149047/150‑1 (MQ=255)
                                                                               gACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGgtatgta                                                    >  1:561784/1‑150 (MQ=255)
                                                                                 cAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGtatgtatg                                                  <  2:217482/150‑1 (MQ=255)
                                                                                     aaatggccacaatgctgtgattttaaacagccaccatGCCGCCCTCCGTGGCCGGATGCGGCAt                                                                                                                                    <  1:384403‑M1/27‑1 (MQ=255)
                                                                                     aaatggccacaatgctgtgattttaaacagccaccatGCCGCCCTCCGTGGCCGGATGCGGCAt                                                                                                                                    >  2:384403‑M1/38‑64 (MQ=255)
                                                                                      gAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTtgcct                                                                                             >  1:374303/1‑102 (MQ=255)
                                                                                      gAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTtgcct                                                                                             <  2:374303/102‑1 (MQ=255)
                                                                                          tctcGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTAt                                         >  1:530225/1‑150 (MQ=255)
                                                                                            tcGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCa                                       >  1:337287/1‑150 (MQ=255)
                                                                                                        attttaaacagccaccatGCCGCATCCGGCCACGGAGGGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACa                               <  1:322825‑M1/128‑1 (MQ=255)
                                                                                                        attttaaacagccaccatGCCGCATCCGGCCACGGAGGGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACa                               >  2:322825‑M1/19‑146 (MQ=255)
                                                                                                                ccATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTaaga                   <  2:20297/150‑1 (MQ=255)
                                                                                                                         catgccgcatccggccacggagggcggcATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCAGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCAc            >  1:18362‑M2/29‑150 (MQ=255)
                                                                                                                          atgccgcatccggccacggagggcggcATGGTGGCTGTTTAAAATCACAGCATTGTGGCCAttt                                                                                                 >  2:384403‑M2/28‑64 (MQ=255)
                                                                                                                          atgccgcatccggccacggagggcggcATGGTGGCTGTTTAAAATCACAGCATTGTGGCCAttt                                                                                                 <  1:384403‑M2/37‑1 (MQ=255)
                                                                                                                          GCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCACTTc         >  2:561784‑M1/1‑150 (MQ=255)
                                                                                                                             GCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCACTTCGGa      >  1:549488‑M1/1‑150 (MQ=255)
                                                                                                                               ccTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCAATTCGGATg    >  1:247258/1‑150 (MQ=255)
                                                                                                                                 tCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCACTTCGGATGCt  <  2:337287/150‑1 (MQ=255)
                                                                                                                                             aTGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCACTTCGGATg    <  1:209674/137‑1 (MQ=255)
                                                                                                                                             aTGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCACTTCGGATg    >  2:209674/1‑137 (MQ=255)
                                                                                                                                                     |                                                                                                                                   
TGCCCTTGCAGGGCTCAAAGTCTTCGAGGTAGACGCTGATCGGGTCCAGGCCTTCGGCGCCAGTGATCAGCAGCTTGGTGACAGTGGAGGTCTCGACTTGCATTGCGGTACTCCATGCATGCGCCGCCCTCCGTGGCCGGATGCGGCATGGTGGCTGTTTAAAATCACAGCATTGTGGCCATTTGCCTGCCGTGATTTAGTTGGGGCTCAATACAGAAGGAGGTATGTATGGCTTGGTATCACCGCGACAGTGATGTTAAGAAGAGCACTTCGGATGCT  >  NC_002947/1745700‑1745978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.