| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5506609 = | 82 (1.710) | 8 (0.210) | 10/210 | 2.7 | 12.9% | intergenic (+20/‑179) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease |
| ? | NC_002947 | 5506680 = | 44 (1.180) | intergenic (+91/‑108) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5506777‑5506609‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > NC_002947/5506680‑5506826 CTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGG < 1:386740/150‑1 CTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTT < 2:499150/150‑1 CTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCCCTCCTTCAACCCGGGCC‑C‑CTGTAGGCGCGGGTT > 2:889244/1‑150 GTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCTTGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGCTTAC > 2:445394/1‑150 GCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCC > 2:593172/1‑142 GCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCC < 1:593172/142‑1 CGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGC < 2:1128767/150‑1 GCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGG > 2:1196140/1‑126 CTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGG‑GACCG‑CGTTGTAGGAGCGGGTTTACCCGCGAA > 2:529055/1‑137 CTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAA < 1:529055/137‑1 GCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCC < 1:473315/134‑1 GCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCC > 2:473315/1‑134 tGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCG < 2:946578/52‑1 tGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCG > 1:946578/2‑53 ACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGAT > 2:968963/1‑93 ACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGAT < 1:968963/93‑1 CCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAA > 2:1179450/1‑150 CCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCC > 2:1001330/1‑103 CCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCC < 1:1001330/103‑1 CGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGA > 1:838499/1‑142 CGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGA < 2:838499/142‑1 CTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAA > 2:37896/1‑40 CTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAA < 1:37896/40‑1 CAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCC < 1:1179450/150‑1 GGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCAC < 2:714745/150‑1 GAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACC > 2:723769/1‑150 GCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCA < 1:696913/146‑1 GCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCA > 2:696913/1‑146 GGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATA < 2:224013/150‑1 aaACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGA < 1:656208/148‑1 TTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGA < 2:322634/150‑1 TACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGAC < 1:261703/150‑1 CCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTTTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAG > 2:1023301/1‑150 CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGA < 1:723769/150‑1 GGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCA > 1:705070/1‑150 GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > 1:795336/1‑150 CTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5506777‑5506609‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > NC_002947/5506680‑5506826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |