| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 359677 = | 37 (1.590) | 7 (0.320) | 7/240 | NT | 17.5% | intergenic (+34/+86) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 359721 = | 31 (1.410) | intergenic (+78/+42) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein | |||||
GCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/359828‑359677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCA > NC_002947/359721‑359869 GCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTG < 1:389069/150‑1 TACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGcg > 2:327866/1‑148 GCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGC‑GGTGATCTGTGGGGGCGG < 1:446825/150‑1 CGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAG > 2:114154/1‑150 GAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATG < 1:114154/150‑1 CACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAA < 1:84451/102‑1 CACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAA > 2:84451/1‑102 CACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGC < 1:105028/92‑1 CACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGC > 2:105028/1‑92 CA‑CCGCTG‑GCTCAAGCTCAGC‑GGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGA > 1:307429/1‑150 GGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCA < 1:103307/150‑1 GCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA‑CCGCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/359828‑359677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCA > NC_002947/359721‑359869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |