New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	359677 =	37 (1.590)	7 (0.320)	7/240	NT	17.5%	intergenic (+34/+86)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein
	?	NC_002947	359721 =	31 (1.410)					intergenic (+78/+42)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein

AGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCA  >  NC_002947/359578‑359869                                                                                                                                                  |                                                                                                                                                     gccaggccatcgacaagcaactgttgccagcgttggcgcagttcaacaaacgcgcgtaatccatttacccaggaccggccccttcgcggaacaagcccgcccccacaggtcacccgctgagcttgagccagcggtgatctgtgggggcgg                                                                                                                                                  <  1:446825‑M2/5‑1 (MQ=255)     ggCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑GAGCGG‑TGATCTGTGGGGGCGGGCTTGt                                                                                                                                            >  1:544084/1‑150 (MQ=255)       ccGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTc                                                                                                                                          <  2:378372/150‑1 (MQ=255)       catcgacaagcaactgttgccagcgttggcgcagttcaacaaacgcgcgtaatccatttacccaggaccggcctcttcgcgggcacgcccgctCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTc                                                                                                                                          <  1:114154‑M1/57‑1 (MQ=255)              cggcCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGTGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCTGGCTTGTTCCGCGAAg                                                                                                                                   <  1:74396/150‑1 (MQ=255)              cggcCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAg                                                                                                                                   <  2:18461/150‑1 (MQ=255)                  ccTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGc                                                                                                                               <  1:271511/150‑1 (MQ=255)                    ctgttgccagcgttggcgcagttcaacaaacgcgcgtaatccatttacccaggaccggcctcttcgcgggcacgcccgctCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCg                                                                                                                             >  2:114154‑M1/81‑150 (MQ=255)                        ccAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTcc                                                                                                                         >  1:41204/1‑150 (MQ=255)                         cAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCt                                                                                                                        <  1:489280/150‑1 (MQ=255)                                 cAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAAt                                                                                                                <  2:41204/150‑1 (MQ=255)                                    tGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGa                                                                                                             <  2:136013/150‑1 (MQ=255)                                     gAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑GGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGAt                                                                                                            <  2:241538/150‑1 (MQ=255)                                                  ccAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTttgt                                                                                               >  2:103307/1‑150 (MQ=255)                                                   cAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTttgtt                                                                                              >  1:218814/1‑150 (MQ=255)                                                   cAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTttgtt                                                                                              >  1:416493/1‑150 (MQ=255)                                                         aaGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAAt                                                                                                                >  2:273849/1‑126 (MQ=255)                                                         aaGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAAt                                                                                                                <  1:273849/126‑1 (MQ=255)                                                         aaGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTg                                                                                        >  1:458589/1‑150 (MQ=255)                                                              tctGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGCACTGCGCCa                                                                                   >  1:391034/1‑150 (MQ=255)                                                              tctGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCa                                                                                   >  1:362105/1‑150 (MQ=255)                                                                            ggCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGt                                                                     >  2:511047/1‑150 (MQ=255)                                                                            cggccccttcgcggaacaagcccgcccccacagatcaccgctggctcaagctcagcgggtgacctgtgggAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAg                                                                      >  2:114154‑M2/71‑150 (MQ=255)                                                                               ctctTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGc                                                                  <  2:218814/150‑1 (MQ=255)                                                                                         gaacaagcccgcccccacagatcaccgctggctcaagctcagcgggtgacctgtgggAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATg                                                         <  1:114154‑M2/93‑1 (MQ=255)                                                                                           aCGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGGACTGCGCCAACGCTgg                                                                            <  2:553000/128‑1 (MQ=255)                                                                                           aCGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGGACTGCGCCAACGCTgg                                                                            >  1:553000/1‑128 (MQ=255)                                                                                           aCGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGcc                                                      >  2:531356/1‑150 (MQ=255)                                                                                            cGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCt                                                     >  1:518978/1‑150 (MQ=255)                                                                                               ccgccCCCACAGATCACC‑GCTG‑GCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGc                                                  <  1:446825‑M1/145‑1 (MQ=255)                                                                                               ccGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGc                                                  <  2:518978/150‑1 (MQ=255)                                                                                                  cgCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTa                                               >  2:327866‑M1/3‑150 (MQ=255)                                                                                                   tCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTAc                                              >  1:45095/1‑150 (MQ=255)                                                                                                      CACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGc                                           <  1:389069‑M1/150‑1 (MQ=255)                                                                                                        cacagatcaccgctggctcaagctcagcgggtgacctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTAcgcgc                                                                                                     <  1:105028‑M2/50‑1 (MQ=255)                                                                                                        cacagatcaccgctggctcaagctcagcgggtgacctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTAcgcgc                                                                                                     >  2:105028‑M2/43‑92 (MQ=255)                                                                                                        cacagatcaccgctggctcaagctcagcgggtgacctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGaa                                                                                           <  1:84451‑M2/60‑1 (MQ=255)                                                                                                        cacagatcaccgctggctcaagctcagcgggtgacctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGaa                                                                                           >  2:84451‑M2/43‑102 (MQ=255)                                                                                                              aCCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGa                                   <  2:544084/150‑1 (MQ=255)                                                                                                                caccgctggctcaagctcagcggtgatctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGa                                   >  1:307429‑M2/35‑150 (MQ=255)                                                                                                                      aGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTgg                                                   <  2:414331/126‑1 (MQ=255)                                                                                                                      aGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTgg                                                   >  1:414331/1‑126 (MQ=255)                                                                                                                              c‑cAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTNCTTNTCGANGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGgt                   <  1:511047/150‑1 (MQ=255)                                                                                                                                cAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGgtg                  <  1:237775/150‑1 (MQ=255)                                                                                                                                                 gGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTccacca  <  1:103307‑M2/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     AGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGC‑CAGCGG‑TGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCA  >  NC_002947/359578‑359869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.