New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156328 =	17 (0.730)	7 (0.370)	6/204	NT	35.3%	intergenic (+25/‑191)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156401 =	12 (0.640)					intergenic (+98/‑118)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase

GTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1156494‑1156328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTT  >  NC_002947/1156401‑1156549                                                                                                                                                                                                                                                                                                                              GTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGC                                                                                                                                                                        <  1:328144/150‑1                CCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                         <  1:356777/150‑1                                                                                    CTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGGCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCC                                                                                     >  2:350095/1‑150                                                                                                             CCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAA                                                                  <  1:245611/144‑1                                                                                                             CCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAA                                                                  >  2:245611/1‑144                                                                                                                GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAA                                                           >  2:523182/1‑148                                                                                                                GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAA                                                           <  1:523182/148‑1                                                                                                                GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCC                                                                                                    <  2:91369/107‑1                                                                                                                GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCC                                                                                                    >  1:91369/1‑107                                                                                                                                               GTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCC                          >  2:234662/1‑150                                                                                                                                                TAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCAT                                                                                   >  2:244762/1‑92                                                                                                                                                TAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCAT                                                                                   <  1:244762/92‑1                                                                                                                                                TAGGAGAGGGTCCACCCGCGAAGAAGCCCGCACAGGCACCCAAAATGACACTGCCCGGTGACAATGACGTCGTCCTTAGTGACATCCGCCATGACCCCGCTGGCTACAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCC                         <  1:350095/150‑1                                                                                                                                                   GAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCT                      >  1:486378/1‑150                                                                                                                                                     GCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCA                    >  1:303473/1‑150                                                                                                                                                            CACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTA             <  1:360760/150‑1                                                                                                                                                            CACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTA             <  2:486378/150‑1                                                                                                                                                               CCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTG                                                                                              <  2:299734/66‑1                                                                                                                                                               CCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTG                                                                                              >  1:299734/1‑66                                                                                                                                                                       AGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTT  <  2:7011/150‑1                                                                                                                                                                                                                                                                                                                              GTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1156494‑1156328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTT  >  NC_002947/1156401‑1156549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.