New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156328 =	17 (0.730)	7 (0.370)	6/204	NT	35.3%	intergenic (+25/‑191)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156401 =	12 (0.640)					intergenic (+98/‑118)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase

GGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTT  >  NC_002947/1156259‑1156549                                                                                                                                               |                                                                                                                                                     ggcgggcTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGca                                                                                                                                               >  1:7011/1‑150 (MQ=255)   cggtcTGCGGGTGACCCTGTCTCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTTAACCCGCTACCACAATGTCCTCGTCAGGTTTGCGTCATAGGAGCGTGTTCACCCGCGAAGAGGCCCGcaca                                                                                                                                             <  2:425794/150‑1 (MQ=255)    ggcggatgtcacgaaggacgacgggattgtcaccgggcagtgacattttgggtgcctgtgcgggctTCTTCGCGGGTGAACCCGCTCCTACAACGCCCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAg                                                                                                                                            >  2:350095‑M1/67‑150 (MQ=255)                                        gATTGACTTTTTGGCGTTCCTTTCTGGGCTTCTTCGCGGGTTAACCCGCTCCTACAACGACCGACTCAGGTTTGCGTCTTACGCGCGGGTTCACCCGCGAAGNGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtc                                                                                                        <  1:299951/150‑1 (MQ=38)                                          ttGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTGACTGCCCGGt                                                                                                                    >  1:455766/1‑136 (MQ=255)                                          ttGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGt                                                                                                                    <  2:455766/136‑1 (MQ=255)                                                       gTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATc                                                                                         >  1:140192/1‑150 (MQ=255)                                                           ctgtgcgggcctcttcgcgggtgaacccgctcctacgacgcaaacctgactcgggcgttgtaggagcgggttcacccgcgaagaAGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGcc                                                                                     >  2:350095‑M2/85‑150 (MQ=255)                                                              tgCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                               >  2:479603/1‑137 (MQ=255)                                                              tgCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                               <  1:479603/137‑1 (MQ=255)                                                                        TTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTgg                                                                        <  1:356777‑M1/150‑1 (MQ=255)                                                                                    cccgctcctacgacgcaaacctgactcggtcgttgtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGaa                                                                  <  1:245611‑M2/85‑1 (MQ=255)                                                                                    cccgctcctacgacgcaaacctgactcggtcgttgtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGaa                                                                  >  2:245611‑M2/60‑144 (MQ=255)                                                                                       gctcctacgacgcaaacctgactcggtcgttgtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTcc                                                                                                    <  2:91369‑M2/51‑1 (MQ=255)                                                                                       gctcctacgacgcaaacctgactcggtcgttgtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTcc                                                                                                    >  1:91369‑M2/57‑107 (MQ=255)                                                                                       gctcctacgacgcaaacctgactcggtcgttgtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCaa                                                           <  1:523182‑M2/92‑1 (MQ=255)                                                                                       gctcctacgacgcaaacctgactcggtcgttgtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCaa                                                           >  2:523182‑M2/57‑148 (MQ=255)                                                                                       GCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAAc                                                         <  1:328144‑M1/150‑1 (MQ=255)                                                                                                   aCCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGa                                             <  2:356777/150‑1 (MQ=255)                                                                                                            ggTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAg                                               >  1:104226/1‑139 (MQ=255)                                                                                                            ggTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAg                                               <  2:104226/139‑1 (MQ=255)                                                                                                            ggTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTgg                                    <  2:140192/150‑1 (MQ=255)                                                                                                                    tcgtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAc                            >  2:360760/1‑150 (MQ=255)                                                                                                                      gtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAccc                          >  2:234662‑M2/26‑150 (MQ=255)                                                                                                                       taggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCAt                                                                                   >  2:244762‑M2/25‑92 (MQ=255)                                                                                                                       taggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCAt                                                                                   <  1:244762‑M2/68‑1 (MQ=255)                                                                                                                       taggagagggtccacccgcgaagaAGCCCGCACAGGCACCCAAAATGACACTGCCCGGTGACAATGACGTCGTCCTTAGTGACATCCGCCATGACCCCGCTGGCTACAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAcccc                         <  1:350095‑M2/126‑1 (MQ=255)                                                                                                                          gagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCt                      >  1:486378‑M2/22‑150 (MQ=255)                                                                                                                            gcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCa                    >  1:303473‑M2/20‑150 (MQ=255)                                                                                                                                   cacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTa             <  1:360760‑M2/138‑1 (MQ=255)                                                                                                                                   cacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTa             <  2:486378‑M2/138‑1 (MQ=255)                                                                                                                                      ccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTg                                                                                              <  2:299734‑M2/57‑1 (MQ=255)                                                                                                                                      ccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTg                                                                                              >  1:299734‑M2/10‑66 (MQ=255)                                                                                                                                              aGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGtt  <  2:7011‑M2/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     GGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTT  >  NC_002947/1156259‑1156549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.