New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2050602 =	2 (0.090)	3 (0.180)	3/180	NT	44.7%	intergenic (‑52/+123)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	2050712 =	6 (0.360)					intergenic (‑162/+13)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

GCCGCGGGCGGGAGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2050777‑2050602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAAC  >  NC_002947/2050712‑2050860                                                                                                                                                                                                                                                                                                                                       GCCGCGGGCGGGAGCGTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGAGGGGTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGCGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTTACATCCCCGTAGGAGCGGG                                                                                                                                                                                 >  2:330024/1‑150       GGCGGGAGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACC                                                                                                                                                                           <  2:605886/150‑1             AGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                                     <  2:347561/150‑1                TTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAG                                                                                                                                                                  <  2:10652/150‑1                            CGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCG                                                                                                                                                             <  1:333272/143‑1                            CGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCG                                                                                                                                                             >  2:333272/1‑143                                                     ATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                                     >  1:500279/1‑110                                                     ATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                                     <  2:500279/110‑1                                                                                             CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGC                                                                                     >  2:54694/1‑150                                                                                              CCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCG                                                                                    >  1:168862/1‑150                                                                                                         GGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATAC                                                                         <  1:54694/150‑1                                                                                                                                              AGGAGCGGGTTCAGCCGCGAAGGGGGCGGGACAGGTTACGCAAAACCATGAAGCGTGCTTCTTCATCAGGTGCGGCGACAGGCTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGGCAGAAACGCACGGCCAGCCACAGCAG                                    <  2:48818/150‑1                                                                                                                                                                GAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGT                  >  2:237724/1‑150                                                                                                                                                                   GAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAG               <  2:82740/150‑1                                                                                                                                                                        CCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAG               >  1:93349/1‑145                                                                                                                                                                        CCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAG               <  2:93349/145‑1                                                                                                                                                                                GTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGACAAAGACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAAC  >  1:162498/1‑150                                                                                                                                                                                                                                                                                                                                       GCCGCGGGCGGGAGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2050777‑2050602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAAC  >  NC_002947/2050712‑2050860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.