New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2676814	23 (0.990)	5 (0.230)	5/238	NT	19.0%	coding (92/315 nt)	PP_2346	hypothetical protein
	?	NC_002947	= 2676840	21 (0.960)					coding (118/315 nt)	PP_2346	hypothetical protein

GTCGAATGGGACGTCGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2676658‑2676814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggatgaTGCCCTTCTGACGGAGCTTCAGGGCTTCATCCTGGTCCAGGTCGCGGGCAACAGCCAGGGAGCAGACGGCAAGCAGCGAGAGCGCCAGGTAACGTGCCGTCCGGGATACATGGATCATCAGCTGTCTCGTTCGTCCTTGAGCACC  <  NC_002947/2676840‑2676696                                                                                                                                                                                                                                                                                                                GTCGAATGGGACGTCGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACC                                                                                                                                                          >  1:357889/1‑150     AATGGGACGTCGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGA                                                                                                                                                      >  1:563395/1‑150                                                             AGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGATGCCCTTCTGACGGAGCTTCAGGGCTTCATCC                                                                                                                   >  1:523605/1‑129                                                             AGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGATGCCCTTCTGACGGAGCTTCAGGGCTTCATCC                                                                                                                   <  2:523605/129‑1                                                                                                               CTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGATGCCCTTCTGACGGAGCTTCAGGGCTTCATC                                                                                                                    >  1:132779/1‑78                                                                                                               CTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGATGCCCTTCTGACGGAGCTTCAGGGCTTCATC                                                                                                                    <  2:132779/78‑1                                                                                                                                            CGACCTGGACCAGGATGATGCCCTTCTGACGGAGCTTCAGGGCTTCATCCTGGTCCAGGTCGCGGGCAACAGCCAGGGAGCAGACGGCAAGCAGCGAGAGCGCCAGGTAACGTGCCGTCCGGGATACATGGATCATCAGCTGTCTCGTTC               >  2:589987/1‑150                                                                                                                                                         GATGATGCCCTTCTGACGGAGCTTCAGGGCTTCATCCTGGTCCAGGTCGCGGGCAACAGCCAGGGAGCAGACGGCAAGCAGCGAGAGCGCCAGGTGAAGTGCCCTCCAGGATTAAACAATGATCAGCTAGCGCGCTCGTCCTTGAGCACC  >  2:5545/1‑150                                                                                                                                                                                                                                                                                                                GTCGAATGGGACGTCGACATGGATGCCAAGACCGGTGAGGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2676658‑2676814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggatgaTGCCCTTCTGACGGAGCTTCAGGGCTTCATCCTGGTCCAGGTCGCGGGCAACAGCCAGGGAGCAGACGGCAAGCAGCGAGAGCGCCAGGTAACGTGCCGTCCGGGATACATGGATCATCAGCTGTCTCGTTCGTCCTTGAGCACC  <  NC_002947/2676840‑2676696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.