New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2676814	23 (0.990)	5 (0.230)	5/238	NT	19.0%	coding (92/315 nt)	PP_2346	hypothetical protein
	?	NC_002947	= 2676840	21 (0.960)					coding (118/315 nt)	PP_2346	hypothetical protein

GGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTGACGACTGAAGGTGTGGTGCGCGAGAT  >  NC_002947/2676696‑2676985                                                                                                                                                 |                                                                                                                                                  ggTGCTCAAGGACGAGCGCGCTAGCTGATCATTGTTTAATCCTGGAGGGCACTTCACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatc                                                                                                                                              >  2:5545‑M2/1‑145 (MQ=255)              gaacgaGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcg                                                                                                                                 >  2:589987‑M2/1‑132 (MQ=255)              gaacgaGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGc                                                                                                                                 >  2:26962/1‑150 (MQ=255)                acgaGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCaa                                                                                                                               >  2:229958/1‑150 (MQ=255)                          tgatgaTCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAGTTGCTCgagc                                                                                                                     <  1:232016/150‑2 (MQ=255)                                      tATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGc                                                                                                         <  1:26962/150‑1 (MQ=255)                                      tATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGc                                                                                                         <  2:357889/150‑1 (MQ=255)                                                 gCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCggg                                                                                              >  1:517747/1‑150 (MQ=255)                                                     gTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGgcgc                                                                                          >  2:47381/1‑150 (MQ=255)                                                             gcgcTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTctgctg                                                                                  <  2:563395/150‑1 (MQ=255)                                                               gcTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGAGCTGGACCAGGATGAAGGCCTGTAGCTACGTCATAAGGGTATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTCGGGCGTCATTCCGGGGCGCGTCTGCTGGa                                                                                >  1:304553/1‑150 (MQ=255)                                                                ctctCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGaa                                                                               <  1:173621/150‑1 (MQ=255)                                                                   tcGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGaa                                                                               >  1:398186/1‑147 (MQ=255)                                                                   tcGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGaa                                                                               <  2:398186/147‑1 (MQ=255)                                                                     gctgctTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGa                                                                          <  1:47381/150‑1 (MQ=255)                                                                        gctTGCCGTCTGCTCCCTGGCTGTCGCCCGCCACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGACACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCt                                                                       <  2:304553/150‑1 (MQ=255)                                                                              cGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAg                                                                              >  1:463993/1‑137 (MQ=255)                                                                              cGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAg                                                                              <  2:463993/137‑1 (MQ=255)                                                                               gTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGgaagaa                                                                >  1:337781/1‑150 (MQ=255)                                                                                                   ccGCGACCTGGACCAGTATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAata                                            >  2:53566/1‑150 (MQ=255)                                                                                                                  ggATGAAGCCCTGCAGCTCCGTCAGAAGGGCATCATCCTGCCGCGCGAGCAACTGCTCGAGCCCGCCCTGGGGCGGCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCt                             <  1:226530/150‑1 (MQ=255)                                                                                                                  ggATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaagcagcgagagcgccaggtaacgtgccgtccgggatacatggatcatcagct                                                  >  1:523605‑M2/1‑32 (MQ=255)                                                                                                                  ggATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaagcagcgagagcgccaggtaacgtgccgtccgggatacatggatcatcagct                                                  <  2:523605‑M2/129‑98 (MQ=255)                                                                                                                   gATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaag                                                                                                    <  2:132779‑M2/78‑48 (MQ=255)                                                                                                                   gATGAAGCCCTGAAGCTCCGTCAGAAGGGCAtcatcctggtccaggtcgcgggcaacagccagggagcagacggcaag                                                                                                    >  1:132779‑M2/1‑31 (MQ=255)                                                                                                                   gATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGACGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTg                            >  1:544823/1‑150 (MQ=255)                                                                                                                             tGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTGACGACTGAAg                  >  2:134145/1‑150 (MQ=255)                                                                                                                                             gggCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTGACGACTGAAGGTGTGGTGCGCGAGAt  >  1:315250/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GGTGCTCAAGGACGAACGAGACAGCTGATGATCCATGTATCCCGGACGGCACGTTACCTGGCGCTCTCGCTGCTTGCCGTCTGCTCCCTGGCTGTTGCCCGCGACCTGGACCAGGATGAAGCCCTGAAGCTCCGTCAGAAGGGCATCATCCTGCCGCTCGAGCAACTGCTCGAGACCGCCCTGGGGCGTCATCCCGGGGCGCGTCTGCTGGAAGCCGAGCTGGAAGAAGACGATGATCGCTACGAATATGAAGTCGAGTTGCTGACGACTGAAGGTGTGGTGCGCGAGAT  >  NC_002947/2676696‑2676985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.