New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4065632 =	27 (1.160)	3 (0.130)	3/246	NT	10.5%	coding (372/1491 nt)	PP_3582	RND transporter outer membrane protein
	?	NC_002947	4065689 =	25 (1.110)					coding (315/1491 nt)	PP_3582	RND transporter outer membrane protein

CCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4065689‑4065632 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTCGG  >  NC_002947/4065689‑4065834                                                                                                                                                                                                              CCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCC                                                        >  2:415961/1‑150       CCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAG                                                                               <  1:292719/121‑1       CCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAG                                                                               >  2:292719/1‑121                                                       CCTGGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTCGG  <  1:483520/150‑1                                                                                                                                                                                                              CCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4065689‑4065632 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGCGATACTGGGCTTCTGATTGCGCCACGGTCTGGTTGCTGCGGTTGAGCTCTTCGACCAGCGCATTGAGCCCAGCATCGCCGTAGATTTCCCACCAGGCGCCGCGGGCGATGGCGTCGGACGGCGAGGCCTGGGTCCAGCCTTCGG  >  NC_002947/4065689‑4065834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.