New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4483008	24 (1.030)	3 (0.140)	3/242	NT	11.4%	coding (970/987 nt)	PP_3974	LysR family transcriptional regulator
	?	NC_002947	= 4483013	24 (1.080)					coding (975/987 nt)	PP_3974	LysR family transcriptional regulator

GTTCGAGCCGGCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4482858‑4483008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcagg‑GATGGCCTGCTGACCTTCGACCAAAGGTTTGAGGTCGGCCACGGCAGCCGCGCAGAACGTCATGAATGCTTTTACCCGCCAGGACTTTCTGATGTCCTGGTGGGTGAGCAGCCACAACTCATCCTGAAGCTCCTGCACCACTGGGC  <  NC_002947/4483013‑4482868                                                                                                                                                                                                                                                                                                            GTTCGAGCCGGCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAG                                                                                                                                                      >  2:103632/1‑150  TTCGAGCCGGCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCTACCAGGCCATGAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGCCCTCAAACCTTTGGTCGAGGGCCAGCAGG                                                                                                                                                     >  1:545203/1‑150                                                    ACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCA                                                                                                                                                          >  1:360113/1‑95                                                    ACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCA                                                                                                                                                          <  2:360113/95‑1                                                                                                                            CTCAAACCTTTGGTCGAAGGTCAGCAGGCCAT‑CCCTGCTGACCTTCGACCAAAGGTTTGAGGTCGGCCACGGCAGCCGCGCAGAACGTCATGAATGCTTTTACCCACCAGGACTTTCTGATGTCCTGGTGG                                             >  1:574611/1‑131                                                                                                                            CTCAAACCTTTGGTCGAAGGTCAGCAGGCCAT‑CCCTGCTGACCTTCGACCAAAGGTTTGAGGTCGGCCACGGCAGCCGCGCAGAACGTCATGAATGCTTTTACCCACCAGGACTTTCTGATGTCCTGGTGG                                             <  2:574611/131‑1                                                                                                                             TCAAACCTTTGGTCGAAGGTCAGCAGGCCAT‑CCCTGCTGACCTTCTACCAAAGGTTTGAGGTCGGCCACGGCAGCCGCGCAGAACGTCATGAATGCTTTTACCCGCCAGGACTTTCTGATGTCCTGGTGGGTGAGCAGCCACAACTCATC                         >  1:295789/1‑150                                                                                                                                                    CAGG‑GATGGCCTGCTGACCTTCGACCAAAGGTTTGAGGTCGGCCACGGCAGCCGCGCAGAACGTCATGAATGCTTTTACCCGCCAGGACTTTCTGATGTCCTGGTGGGTGAGCAGCCACAACTCATCCTGAAGCTCCTGCACCACTGGGC  <  2:281741/150‑1                                                                                                                                                                                                                                                                                                            GTTCGAGCCGGCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4482858‑4483008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcagg‑GATGGCCTGCTGACCTTCGACCAAAGGTTTGAGGTCGGCCACGGCAGCCGCGCAGAACGTCATGAATGCTTTTACCCGCCAGGACTTTCTGATGTCCTGGTGGGTGAGCAGCCACAACTCATCCTGAAGCTCCTGCACCACTGGGC  <  NC_002947/4483013‑4482868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.