| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4483008 | 24 (1.030) | 3 (0.140) | 3/242 | NT | 11.4% | coding (970/987 nt) | PP_3974 | LysR family transcriptional regulator |
| ? | NC_002947 | = 4483013 | 24 (1.080) | coding (975/987 nt) | PP_3974 | LysR family transcriptional regulator | |||||
TTCGAGCCGGCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTGGGGACGCTGTGCGAGCCGCGATACACCGATGATATTACTGGCCGCCTGCGGGCGCTCGG > NC_002947/4482859‑4483154 | ttCGAGCCGGCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCTACCAGGCCATGAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGCCCTCAAACCTTTGGTCGAGGGCCAGCAGG > 1:545203‑M1/1‑150 (MQ=255) gCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCcctg < 2:281741‑M2/150‑5 (MQ=255) aGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTc < 2:511717/150‑1 (MQ=255) gATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGgcg > 2:508603/1‑150 (MQ=255) gATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTAGAAGGTCAGCAGGG‑ATGgcctgctgaccttcgaccaaaggtttga > 1:295789‑M2/1‑122 (MQ=255) aTGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTg < 1:232947/137‑1 (MQ=255) aTGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTg > 2:232947/1‑137 (MQ=255) ggCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCAttt < 1:225515/150‑1 (MQ=255) gctgctCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTg > 2:53679/1‑150 (MQ=255) ctCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCtt < 1:221629/150‑1 (MQ=255) ctCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCtt < 1:508603/150‑1 (MQ=255) tCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTg > 1:296853/1‑150 (MQ=255) ccaccaGGACATCAGAAAGTCCTGGTGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGG‑ATGgcctgctgaccttcgaccaaaggtttgag < 2:574611‑M2/131‑30 (MQ=255) ccaccaGGACATCAGAAAGTCCTGGTGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGG‑ATGgcctgctgaccttcgaccaaaggtttgag > 1:574611‑M2/1‑102 (MQ=255) caGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGa < 1:255734/150‑1 (MQ=255) aGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGAt < 1:279289/150‑1 (MQ=255) cATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATcaca < 1:281741/150‑1 (MQ=255) aTCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAg > 1:434926/1‑150 (MQ=255) cAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCa < 2:186244/150‑1 (MQ=255) aaaGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTGCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCa > 1:197306/1‑150 (MQ=255) aaGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAg < 1:310100/150‑1 (MQ=255) aTTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTgg > 1:265845/1‑150 (MQ=255) tGACGTTCTGCGCGGCTGACGTGGCCGACCTCAAAGCTTAGATCGAAGGTGAGCAGGCCATCCGTGCTTCATAGTTGAAATCAGAGGAGGAATTAATTTGGATTGGGAGACGATAAAAGCACGAAAAACGATGTAGATCAGATGAGGGCg > 2:180520/1‑150 (MQ=255) tGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTGGGGACGCTGTGCGa < 2:161067/150‑1 (MQ=255) tGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGAtc < 2:102482/117‑1 (MQ=255) tGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGAtc > 1:102482/1‑117 (MQ=255) cTCAAACCTTTGGTCGAAGGTCAGCAGGccatccctgctgaccttcgaccaaaggtttgaggtcggccacggcagccgcgcagaacgtcatgaatgcttttacccaccaggactttctgatgtcctggtgg > 1:574611‑M1/1‑28 (MQ=255) cTCAAACCTTTGGTCGAAGGTCAGCAGGccatccctgctgaccttcgaccaaaggtttgaggtcggccacggcagccgcgcagaacgtcatgaatgcttttacccaccaggactttctgatgtcctggtgg < 2:574611‑M1/131‑104 (MQ=255) cTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTGGGGACGCTGTGCGAGCCGCGATACACCGATGatat > 2:231058/1‑150 (MQ=255) tCAAACCTTTGGTCGAAGGTCAGCAGGccatccctgctgaccttctaccaaaggtttgaggtcggccacggcagccgcgcagaacgtcatgaatgcttttacccgccaggactttctgatgtcctggtgggtgagcagccacaactcatc > 1:295789‑M1/1‑27 (MQ=255) tCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTGGGGACGCTGTGCGAGCCGCGATACACCGATGATAtt > 1:515347/1‑150 (MQ=255) cGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTGGGGACGCTGTGCGAGCCGCGATACACCGATGTTATTCCTGGCCGCCTGc < 2:265845/150‑1 (MQ=255) gcagGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTGGGGACGCTGAAAGAGCCGCGATACACCGATGATATTACTGGCCGCCTGCGGGCGCCCg < 2:545203/150‑1 (MQ=255) cagGgatggcctgctgaccttcgaccaaaggtttgaggtcggccacggcagccgcgcagaacgtcatgaatgcttttacccgccaggactttctgatgtcctggtgggtgagcagccacaactcatcctgaagctcctgcaccactgggc < 2:281741‑M1/150‑147 (MQ=255) | TTCGAGCCGGCCCAGTGGTGCAGGAGCTTCAGGATGAGTTGTGGCTGCTCACCCACCAGGACATCAGAAAGTCCTGGCGGGTAAAAGCATTCATGACGTTCTGCGCGGCTGCCGTGGCCGACCTCAAACCTTTGGTCGAAGGTCAGCAGGCCATCCCTGCTTCCTAGTTGAAATCGGAGGCGCCGTTCATTTGGCTTGGGTGCCGATCACAGCACGACACACGATCTCGATCAGCTGGGGACGCTGTGCGAGCCGCGATACACCGATGATATTACTGGCCGCCTGCGGGCGCTCGG > NC_002947/4482859‑4483154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |