| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5118306 = | 30 (1.290) | 4 (0.180) | 4/240 | NT | 12.2% | coding (32/1341 nt) | PP_4505 | sensor histidine kinase |
| ? | NC_002947 | 5118327 = | 29 (1.320) | coding (53/1341 nt) | PP_4505 | sensor histidine kinase | |||||
CAGGCCTTCCTGCTCGTAGTGCTTGGTCCACTTGCTGGCCAGGGTATTCAGGCCCGGGTGACGGCTGAGGATCCAGGCGTCCTGGTTGAGCATGTGCCCCAGCAGGATCGACAGGCCTGCGACCAGGGTGATGGCCAGCCAGAAACTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5118457‑5118306‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccaTCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTGGAGGCGGCCCAGCACTT > NC_002947/5118327‑5118474 CAGGCCTTCCTGCTCGTAGTGCTTGGTCCACTTGCTGGCCAGGGTATTCAGGCCCGGGTGACGGCTGAGGATCCAGGCGTCCTGGTTGAGCATGTGCCCCAGCAGGATCGACAGGCCTGCGACCAGGGTGATGGCCAGCCAGAAACTGGC > 1:296442/1‑150CAGGCCTTCCTGCTCGTAGTGCTTGGTCCACTTGCGGGCCAGGGTATTCAGGCCCGGGTGACGGCTGAGGATCCAGGCGTCCTGGTTGAGCATGTGCCCCAGCAGGATCGACAGGCCTGCGACCAGGGTGATGGCCAGCCAGAAACTGGC < 1:310979/150‑1 CTCGTAGTGCTTGGTCCACTTGCTGGCCAGGGTATTCAGGCCCGGGTGACGGCTGAGGATCCAGGCGTCCTGGTTGAGCATGTGCCCCAGCAGGATCGACAGGCCTGCGACCAGGGTGATGGCCAGCCAGAAACTGGCCA > 1:574030/1‑140 CTCGTAGTGCTTGGTCCACTTGCTGGCCAGGGTATTCAGGCCCGGGTGACGGCTGAGGATCCAGGCGTCCTGGTTGAGCATGTGCCCCAGCAGGATCGACAGGCCTGCGACCAGGGTGATGGCCAGCCAGAAACTGGCCA < 2:574030/140‑1 GATGGCCAGCCAGAAACTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACAT > 1:47596/1‑63 GATGGCCAGCCAGAAACTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACAT < 2:47596/63‑1 CCAGCCAGAAACTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTG < 1:392635/50‑1 CCAGCCAGAAACTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTG > 2:392635/1‑50 CATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTGGAGGCGGCCCAGCACTT > 2:13592/1‑150 CAGGCCTTCCTGCTCGTAGTGCTTGGTCCACTTGCTGGCCAGGGTATTCAGGCCCGGGTGACGGCTGAGGATCCAGGCGTCCTGGTTGAGCATGTGCCCCAGCAGGATCGACAGGCCTGCGACCAGGGTGATGGCCAGCCAGAAACTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5118457‑5118306‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccaTCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTGGAGGCGGCCCAGCACTT > NC_002947/5118327‑5118474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |