New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5118306 = | 30 (1.290) | 4 (0.180) | 4/240 | NT | 12.2% | coding (32/1341 nt) | PP_4505 | sensor histidine kinase |
? | NC_002947 | 5118327 = | 29 (1.320) | coding (53/1341 nt) | PP_4505 | sensor histidine kinase |
GCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTGGAGGCGGCCCAGCACTTTC > NC_002947/5118181‑5118476 | gCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCAc > 1:241308/1‑150 (MQ=255) tGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCt > 2:519844/1‑150 (MQ=255) cTGAAAAAGGCGCCACGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCa < 2:426613/150‑1 (MQ=255) aaaaaGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAAGTGCACTTGCGTTCACTGTTCTGGCGCATCTTGGCCAGTTTCTGGCTGGCCATCACACTGGTCGCAGGc > 1:130294/1‑150 (MQ=255) aGGCGCCAAGGCCCAGTACGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGt < 1:448331/150‑1 (MQ=255) ccAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTTCTCTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTgg < 1:10882/150‑1 (MQ=255) cAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTggg < 2:415385/150‑1 (MQ=255) tGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGc < 1:237201/150‑1 (MQ=255) gCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc < 1:519844/150‑1 (MQ=255) ggcccgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTg > 2:499319/1‑150 (MQ=255) ccgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc > 1:448050/1‑136 (MQ=255) ccgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc < 2:448050/136‑1 (MQ=255) gCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGc > 1:305657/1‑104 (MQ=255) gCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGc < 2:305657/104‑1 (MQ=255) tCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCa < 2:278924/150‑1 (MQ=255) ggccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTAAACCATGACGCCTGGATCCTCAGCCGTCAc < 1:14036/150‑1 (MQ=255) gccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTc < 1:365127/97‑1 (MQ=255) gccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTc > 2:365127/1‑97 (MQ=255) ccgggcTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCACCCAGGACGCCTGGATCCTCAGCCGTCAccc > 2:296442/1‑150 (MQ=255) cGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATcc > 1:509943/1‑125 (MQ=255) cGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATcc < 2:509943/125‑1 (MQ=255) gTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATc > 2:319749/1‑123 (MQ=255) gTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATc < 1:319749/123‑1 (MQ=255) atgtgccccagcaggatcgacaggcctgcgaccagggtgaTGGCCAGTTTCTGGCTGGCCATc < 2:47596‑M1/23‑1 (MQ=255) atgtgccccagcaggatcgacaggcctgcgaccagggtgaTGGCCAGTTTCTGGCTGGCCATc > 1:47596‑M1/41‑63 (MQ=255) tttAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAg < 2:92321/127‑1 (MQ=255) tttAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAg > 1:92321/1‑127 (MQ=255) cgggCGTTCACTGTTCTGGCGCATCCTGACCAGTTTCTGGATGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGCAACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCACGTg < 2:130294/147‑1 (MQ=255) ttCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTgg > 2:267525/1‑50 (MQ=255) ttCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTgg < 1:267525/50‑1 (MQ=255) cACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGc > 1:489863/1‑150 (MQ=255) aTCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGaa < 1:499319/150‑1 (MQ=255) gatggccagccagaaactggccaTCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACAt > 1:47596‑M2/24‑63 (MQ=255) gatggccagccagaaactggccaTCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACAt < 2:47596‑M2/40‑1 (MQ=255) TGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAg > 1:574030‑M1/1‑140 (MQ=255) TGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAg < 2:574030‑M1/140‑1 (MQ=255) GCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCCGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTg < 1:310979‑M1/150‑1 (MQ=255) GCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTg > 1:296442‑M1/1‑150 (MQ=255) ccagccagaaactggccaTCACCCTGGTCGCAGGCCTGTCGATCctgctg > 2:392635‑M2/19‑50 (MQ=255) ccagccagaaactggccaTCACCCTGGTCGCAGGCCTGTCGATCctgctg < 1:392635‑M2/32‑1 (MQ=255) caTCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTGGAGGCGGCCCAGCACtt > 2:13592‑M2/3‑150 (MQ=255) tCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTGGAGGCGGCCCAGCACTTTc < 2:489863/150‑1 (MQ=255) | GCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAGCCGTCACCCGGGCCTGAATACCCTGGCCAGCAAGTGGACCAAGCACTACGAGCAGGAAGGCCTGGAGGCGGCCCAGCACTTTC > NC_002947/5118181‑5118476 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |