| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5246988 | 19 (0.820) | 4 (0.190) | 4/234 | NT | 17.6% | coding (1721/3303 nt) | PP_4623 | hypothetical protein |
| ? | NC_002947 | = 5247071 | 20 (0.930) | coding (1638/3303 nt) | PP_4623 | hypothetical protein | |||||
ATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5246868‑5246988‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatggcgctCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTTGCGCAAGGTCGAGCTGCTACCCACTGACTGGTCCATGCACAGCGTGACGCTCGCGC < NC_002947/5247071‑5246923 ATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGC > 1:27407/1‑120ATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGC < 2:27407/120‑1 CTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCT > 2:141839/1‑150 TCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTT > 1:514178/1‑150 CACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTTG < 2:514178/150‑1 ACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTTGC < 1:141839/150‑1 GCTCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTTGCGCAAGGTCGAGCTGCTACCCACTGACTGGTCCATGCACAGCGTGACGCTCGC > 1:196867/1‑150 GCTCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTTGCGCAAGGTCGAGCTGCTACCCACTGACTGGTCCATGCACAGCGTGACGCTCGC > 2:189104/1‑150 TCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTTGCGCAAGGTCGAGCTGCTACCCACTGACTGGTCCATGCACAGCGTGACGCTCGCGC > 1:472777/1‑150 ATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5246868‑5246988‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatggcgctCGAAATCGGTAGCTGGACCTTGTGGCCGGTAGGCAGTGAATACCTGCTGGGGCAATGCTCGCGGGCCCAGCATGATTCGCTCAAGCGCCATTTGCGCAAGGTCGAGCTGCTACCCACTGACTGGTCCATGCACAGCGTGACGCTCGCGC < NC_002947/5247071‑5246923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |