New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5246988	19 (0.820)	4 (0.190)	4/234	NT	17.6%	coding (1721/3303 nt)	PP_4623	hypothetical protein
	?	NC_002947	= 5247071	20 (0.930)					coding (1638/3303 nt)	PP_4623	hypothetical protein

GCCTGTTGATCCTCGATCAGGGCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGC  >  NC_002947/5246841‑5247137                                                                                                                                                    |                                                                                                                                                      gCCTGTTGATCCTCGATCAGGGCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTg                                                                                                                                                     >  1:189104/1‑150 (MQ=255)  ccTGTTGATCCTCGATCAGGGCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGa                                                                                                                                                    <  2:535293/150‑1 (MQ=255)            cTCGATCAGGGCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATg                                                                                                                                          <  1:195575/150‑1 (MQ=255)            cTCGATCAGGGCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATg                                                                                                                                          >  1:463183/1‑150 (MQ=255)             tCGATCAGGGCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGc                                                                                                                                         >  1:278496/1‑150 (MQ=255)                      gCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTgg                                                                                                                                      <  2:467219/144‑1 (MQ=255)                      gCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTgg                                                                                                                                      >  1:467219/1‑144 (MQ=255)                                        gCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAgg                                                                                                              <  1:368153/150‑1 (MQ=255)                                           agagCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTAGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTAt                                                                                                           >  2:576087/1‑150 (MQ=255)                                               cTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTcgaaatcggtagctggaccttgtggccggtaggcagtgaatacctgct                                                                                                       >  2:141839‑M1/1‑102 (MQ=255)                                                tttGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACt                                                                                                      >  2:196867/1‑150 (MQ=255)                                                                           cTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGccc                                                                                                                     <  2:64218/108‑1 (MQ=255)                                                                           cTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGccc                                                                                                                     >  1:64218/1‑108 (MQ=255)                                                                                   gcgcGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGa                                                                   >  1:472777‑M2/1‑149 (MQ=255)                                                                                     gcgAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagc                                                                 >  2:189104‑M2/1‑147 (MQ=255)                                                                                     gcgAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagc                                                                 >  1:196867‑M2/1‑147 (MQ=255)                                                                                            tCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTcgaaatcggtagctggaccttgtggccggtaggcagtgaatacctgctggggcaatgctcgcgggcccagcatgattcgctcaagcgccattt                                                          >  1:514178‑M1/1‑57 (MQ=255)                                                                                             cACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTcgaaatcggtagctggaccttgtggccggtaggcagtgaatacctgctggggcaatgctcgcgggcccagcatgattcgctcaagcgccatttg                                                         <  2:514178‑M1/150‑95 (MQ=255)                                                                                              aCGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTcgaaatcggtagctggaccttgtggccggtaggcagtgaatacctgctggggcaatgctcgcgggcccagcatgattcgctcaagcgccatttgc                                                        <  1:141839‑M1/150‑96 (MQ=255)                                                                                                    tgCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACACCGTTCAGTTACCGATTTCGAGAGCCATTTTTTCgagt                                                  <  1:576087/150‑1 (MQ=255)                                                                                                      cATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCgagtga                                                >  1:538774/1‑150 (MQ=255)                                                                                                      cATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGAGCGGGATCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCgagtga                                                <  1:591990/150‑1 (MQ=255)                                                                                                       aTGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCgagtgag                                               >  1:329627/1‑150 (MQ=255)                                                                                                            ccAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGTGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGaa                                          >  1:262199/1‑150 (MQ=255)                                                                                                                tcagtGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGa                                      >  1:434528/1‑150 (MQ=255)                                                                                                                tcagtGGGTAGCAGCTCGACCTTACGCAAAAGGCGCTTGACACAACCATCCTGGGCCCGCGAGCATTGCCCCAGCAGGTCTGCCCTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCTCCATTTTTTCGAGTGACTCGAAAAGa                                      >  2:70485/1‑150 (MQ=255)                                                                                                                          gcagcTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGc                            >  1:55974/1‑150 (MQ=255)                                                                                                                                         gcAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgt             <  1:141839‑M2/150‑56 (MQ=255)                                                                                                                                         gcAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAg             >  1:89351/1‑150 (MQ=255)                                                                                                                                          cAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtg            <  2:514178‑M2/150‑57 (MQ=255)                                                                                                                                           aaaTGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtga           >  1:514178‑M2/1‑93 (MQ=255)                                                                                                                                                  gcTcgaaatcggtagctggaccttgtggccggtaggcagtgaatacctgctggggcaatgctcgcgggcccagcatgattcgctcaagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtgacgctcgc    >  2:189104‑M1/1‑3 (MQ=255)                                                                                                                                                  gcTcgaaatcggtagctggaccttgtggccggtaggcagtgaatacctgctggggcaatgctcgcgggcccagcatgattcgctcaagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtgacgctcgc    >  1:196867‑M1/1‑3 (MQ=255)                                                                                                                                                    tcgaaatcggtagctggaccttgtggccggtaggcagtgaatacctgctggggcaatgctcgcgggcccagcatgattcgctcaagcgccatttgcgcaaggtcgagctgctacccactgactggtccatgcacagcgtgacgctcgcgc  >  1:472777‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GCCTGTTGATCCTCGATCAGGGCAAGGATCTTGCGCTTGGCCAGAGCTTTGAGCACATCCGGCCACTGCTGCGACTTGATCGGCGCGAGCGTCACGCTGTGCATGGACCAGTCAGTGGGTAGCAGCTCGACCTTGCGCAAATGGCGCTTGAGCGAATCATGCTGGGCCCGCGAGCATTGCCCCAGCAGGTATTCACTGCCTACCGGCCACAAGGTCCAGCTACCGATTTCGAGCGCCATTTTTTCGAGTGAGTCGAAAAGATGAAAATCGCCTCCCGGCGCCCCAGGGGCATAGAGC  >  NC_002947/5246841‑5247137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.