| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 25940 | 9 (0.390) | 4 (0.180) | 4/240 | NT | 31.4% | coding (60/924 nt) | PP_0021 | hypothetical protein |
| ? | NC_002947 | = 25952 | 9 (0.410) | coding (72/924 nt) | PP_0021 | hypothetical protein | |||||
TGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGAAGTGCCGGCAAGCTAGCTCAGTTTGCTGTATGCCCGGCATGCGACAACCCTGTCCAGCTGGTTGGGCTGTATGAGCTACCGCCTAACGTGAAGAACCCA > NC_002947/25792‑26084 | tGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATTGATGTCTATAAGGTCCGCATCGAAGCCACAGAAAGCAAGATCATCGACAAGGAAGGtt < 2:200822/150‑1 (MQ=255) ccaAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAgg > 2:599443/1‑150 (MQ=255) aGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTctcggcctcgaaaccttc < 2:122952‑M1/150‑19 (MQ=255) aGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGaccttc > 1:599443‑M2/1‑144 (MQ=255) gTTAGGCCTACTGCTGTCTATCCTCTCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTTTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGaccttcc > 1:353707‑M2/1‑143 (MQ=255) tgcCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGTCGACCCAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGACACCTTCCGCAGAGATCCATgg < 2:20296/150‑1 (MQ=255) gTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTCTCG‑GCCTCGAAaccttccttgtcgatgatc < 2:358671‑M2/133‑20 (MQ=255) gTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTCTCG‑GCCTCGAAaccttccttgtcgatgatc > 1:358671‑M2/1‑114 (MQ=255) tACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGa < 1:358463/105‑1 (MQ=255) tACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGa > 2:358463/1‑105 (MQ=255) tACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTCTCG‑GCCTCGAAaccttccttgtcgatgatcttgctttctgtgtcttcga > 1:353527‑M2/1‑112 (MQ=255) tCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGaa < 2:555130/141‑1 (MQ=255) tCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGaa > 1:555130/1‑141 (MQ=255) tCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTttcgaggccgagaccttccttgtcgatgatcttgctttctgtgtcttcgatgcggaccttatagacatccatctttgctgaaaccgtatcaatagagggtctctggatggta > 1:353527‑M1/1‑38 (MQ=255) cacaGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGAAGTGCCGGCAAGCTAGCTCAGTTTGCTGTATGCCCGGCATGCGACAACCCTGTCCAGCTGGTTGGGCTGTATGa < 2:248718/150‑1 (MQ=255) acaGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGAAGTGCCGGCAAGCTAGCTCAGTTTGCTGTATGCCCGGCATGCGACAACCCTGTCCAGCTGGTTGGGc < 2:294788/142‑1 (MQ=255) acaGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGAAGTGCCGGCAAGCTAGCTCAGTTTGCTGTATGCCCGGCATGCGACAACCCTGTCCAGCTGGTTGGGc > 1:294788/1‑142 (MQ=255) gATCATCGACAAGGAAGGTttcgaggccgagaccttccttgtcgatgatcttgctttctgtgtcttcgatgcggaccttatagacatccatctttgctgaaaccgtatcaatagagggtctctggatggtaac < 2:358671‑M1/133‑115 (MQ=255) gATCATCGACAAGGAAGGTttcgaggccgagaccttccttgtcgatgatcttgctttctgtgtcttcgatgcggaccttatagacatccatctttgctgaaaccgtatcaatagagggtctctggatggtaac > 1:358671‑M1/1‑19 (MQ=255) atcGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGAAGTGCCGGCAAGCTAGCTCAGTTTGCTGTATGCCCGGCATGCGACAACCCTGTCCAGCTGGTTGGGCTGTATGa < 1:82483/134‑1 (MQ=255) atcGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGAAGTGCCGGCAAGCTAGCTCAGTTTGCTGTATGCCCGGCATGCGACAACCCTGTCCAGCTGGTTGGGCTGTATGa > 2:82483/1‑134 (MQ=255) ggaaggTctcggcctcgaaaccttccttgtcgatgatcttgctttctgtgtcttcgatgcggaccttataaacatccatctttgctgaaaccgtatcaatagagggtctctggatggtaacgagagaggatagacagcagtaggcctaac > 1:353707‑M1/1‑7 (MQ=255) gaaggTctcggcctcgaaaccttccttgtcgatgatcttgctttctgtgtcttcgatgcggaccttatagacatccatctttgctgaaaccgtatcaatagagggtctctggatggtaacgagcgaggataggcagcagtaggcctaact > 1:599443‑M1/1‑6 (MQ=255) gaaggTTTCGAGGC‑CGAGaccttccttgtcgatgatcttgctttctgtgtcttcgatgcggaccttatagacatccatctttgctgaaaccgtatcaatagagggtctctggatggtaacgagcgaggataggcagcagtaggcctaact < 2:122952‑M2/150‑133 (MQ=255) | TGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCATCGACAAGGAAGGTTTCGAGGC‑CGAGACCTTCCGCAGAGATCCATGGTACCAGCCTGGAAGTGCCGGCAAGCTAGCTCAGTTTGCTGTATGCCCGGCATGCGACAACCCTGTCCAGCTGGTTGGGCTGTATGAGCTACCGCCTAACGTGAAGAACCCA > NC_002947/25792‑26084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |