New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	850979 =	12 (0.510)	4 (0.180)	4/246	NT	19.2%	intergenic (‑559/‑246)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
	?	NC_002947	= 4908110	22 (0.970)					intergenic (‑41/‑241)	PP_4317/PP_4318	hypothetical protein/transposase

GGCGATGTCGAGCCGATGGCTCTGGCTTTTGCTCTTACTGTCGCTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAAC  >  NC_002947/850830‑851099                                                                                                                                                      |                                                                                                                         gttgccggtgatctggatcttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcagctgacgggcatggatgcccgtcaatcgctgaggccccaggatggggccttcgg                                                                                                                          >  1:145310‑M1/150‑150 (MQ=255)               gATGGCTCTGGCTTTTGCTCTTACTGTCGCTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCAt                                                                                                            >  1:473304/1‑150 (MQ=255)                                 tctTACTGTCGCTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCa                                                                                                             <  1:170822/131‑1 (MQ=255)                                 tctTACTGTCGCTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCa                                                                                                             >  2:170822/1‑131 (MQ=255)                                         tCGCTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAg                                                                                  <  1:384633/150‑1 (MQ=255)                                                      cgcgGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGc                                                                     <  1:102370/150‑1 (MQ=255)                                                        ttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgccgaaggccccatcctggggcctcaGCGCTTGACgg                                                                                                                >  1:234809‑M1/95‑105 (MQ=255)                                                        ttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgccgaaggccccatcctggggcctcaGCGCTTGACgg                                                                                                                <  2:234809‑M1/11‑1 (MQ=255)                                                               tCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAg                                                            >  2:385000/1‑150 (MQ=255)                                                                   gcgcTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTcgc                                                        >  2:183861/1‑150 (MQ=255)                                                                        gCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaaga                                                   <  1:142814/150‑1 (MQ=255)                                                                            aTTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaa                                               <  2:473304/150‑1 (MQ=255)                                                                                                  cGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATc                         >  1:539127/1‑150 (MQ=255)                                                                                                                     aggaCCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGa      <  2:470714/150‑1 (MQ=255)                                                                                                                         ccGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAac  >  2:28686/1‑150 (MQ=255)                                                                                                                              tgaggccccaggatggggccttcgGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAgatcaagatcaagatcaa                                   >  2:441439‑M1/25‑112 (MQ=255)                                                                                                                              tgaggccccaggatggggccttcgGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAgatcaagatcaagatcaa                                   <  1:441439‑M1/88‑1 (MQ=255)                                                                                                                                                      |                                                                                                                         GGCGATGTCGAGCCGATGGCTCTGGCTTTTGCTCTTACTGTCGCTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAAC  >  NC_002947/850830‑851099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.