New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	850979 =	12 (0.510)	4 (0.180)	4/246	NT	19.2%	intergenic (‑559/‑246)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
	?	NC_002947	= 4908110	22 (0.970)					intergenic (‑41/‑241)	PP_4317/PP_4318	hypothetical protein/transposase

GTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAG  >  NC_002947/4907962‑4908254                                                                                                                                                      |                                                                                                                                                 gTTGCCGGTGATCTGGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGCTGACGGGCATGGATGCCCGTCAATCGCTGA‑GGCCCCAGGATGGGGCCTTCGg                                                                                                                                                 >  1:145310‑M2/1‑149 (MQ=255)                              tcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GCCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGt                                                                                                                    >  1:69644/1‑150 (MQ=17)                               cttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTg                                                                                                                   >  1:369180/1‑150 (MQ=32)                                                  ttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgcag                                                                                                >  2:541212/1‑150 (MQ=32)                                                        ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgcagc                                                                                               >  1:372729/1‑145 (MQ=32)                                                        ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgcagc                                                                                               <  2:372729/145‑1 (MQ=32)                                                        ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCCGAAGGCCCCATCCTGGGGCCT‑CAgcgcttgacgg                                                                                                                                       >  1:234809‑M2/1‑94 (MQ=255)                                                        ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCCGAAGGCCCCATCCTGGGGCCT‑CAgcgcttgacgg                                                                                                                                       <  2:234809‑M2/105‑12 (MQ=255)                                                         tCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTGAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAcgg                                                                                         <  2:175928/150‑1 (MQ=17)                                                                         ccGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg                                                                                          <  1:313351/133‑1 (MQ=33)                                                                         ccGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg                                                                                          >  2:313351/1‑133 (MQ=32)                                                                          cGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgca                                                                                                 >  1:415170/1‑125 (MQ=33)                                                                          cGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgca                                                                                                 <  2:415170/125‑1 (MQ=33)                                                                                  ggCCTGGCGGAGGCAGGTGACGCCCATGGATGCTCGTCAAGCGCTGA‑GGCGCCAGGATGGGGCCTTTGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGGGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGttt                                                                <  1:223428/150‑1 (MQ=11)                                                                                      ttGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGGCCTGCCGGGAGGGAGGCCGGAGCGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTg                                                            >  1:199011/1‑150 (MQ=12)                                                                                                aGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGACCGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACttttt                                                  <  1:349540/150‑1 (MQ=17)                                                                                                  gTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGt                                                <  1:541212/150‑1 (MQ=32)                                                                                                         gCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTGGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGttt                                         >  2:443623/1‑150 (MQ=17)                                                                                                           aTGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGa                                       <  2:369180/150‑1 (MQ=32)                                                                                                             ggATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACa                                     >  2:461258/1‑150 (MQ=32)                                                                                                                   ccGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGt                               >  2:250006/1‑150 (MQ=32)                                                                                                                              tGA‑GGCCCCAGGATGGGGCCTTCGgcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaa                                                          <  1:441439‑M2/112‑89 (MQ=255)                                                                                                                              tGA‑GGCCCCAGGATGGGGCCTTCGgcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaa                                                          >  2:441439‑M2/1‑24 (MQ=255)                                                                                                                                        aGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATc           >  1:547577/1‑150 (MQ=32)                                                                                                                                               ggCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCa    >  2:407690/1‑150 (MQ=32)                                                                                                                                                 ccTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCTCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAg  >  1:44343/1‑150 (MQ=17)                                                                                                                                                 ccTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAg  <  1:461258/150‑1 (MQ=32)                                                                                                                                                      |                                                                                                                                                 GTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGA‑GGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAG  >  NC_002947/4907962‑4908254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.