New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1322188	24 (1.030)	4 (0.170)	4/252	NT	13.6%	coding (549/2586 nt)	PP_1154	sensory box protein
	?	NC_002947	= 1322224	27 (1.170)					coding (513/2586 nt)	PP_1154	sensory box protein

GTGGTTGTGATCCTGCCTATCCTCCTTTTCCACGTGCATGCCGGTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCC  >  NC_002947/1322041‑1322331                                                                                                                                                    |                                                                                                                                                gtggtTGTGATCCTGCCTATCCTCCTTTTCCACGTGCATGCCGGTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTc                                                                                                                                               >  2:121246/1‑150 (MQ=255)    gtTGTGATCCTGCCTATCCTCCTTTTCCACGTGCATGCCGGTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCgg                                                                                                                                            <  2:32703/150‑1 (MQ=255)                ccTATCCTCCTTTTCCACGTGCATGCCGGTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGgctgc                                                                                                                                >  1:434816/1‑150 (MQ=255)                                           ggTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCAtt                                                                                                     <  2:107427/150‑1 (MQ=255)                                               aGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAAc                                                                                                 <  1:121246/150‑1 (MQ=255)                                                         cTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGgccggccgcactcagtgcagcagccgtgcgcccggac                                                                                                            <  1:286519‑M1/129‑38 (MQ=255)                                                         cTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGgccggccgcactcagtgcagcagccgtgcgcccggac                                                                                                            >  2:286519‑M1/1‑92 (MQ=255)                                                          tttGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACg                                                                                      >  1:109903/1‑150 (MQ=255)                                                           ttGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATCGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACgg                                                                                     <  2:318889/150‑1 (MQ=255)                                                               ccAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATTACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGa                                                                                 >  2:29363/1‑150 (MQ=255)                                                                cAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGAc                                                                                <  2:434816/150‑1 (MQ=255)                                                                                cTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATc                                                                <  1:120244/150‑1 (MQ=255)                                                                                 tttCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGgccggccgcactcagtgcagcagccgtgcgcccggaccggga                                                                                                       >  1:418919‑M1/1‑68 (MQ=255)                                                                                 tttCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGgccggccgcactcagtgcagcagccgtgcgcccggaccggga                                                                                                       <  2:418919‑M1/110‑43 (MQ=255)                                                                                         aGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCcgcg                                                       <  2:197567/150‑1 (MQ=255)                                                                                            gatcaaaTGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCgg                                                    <  1:572212/145‑1 (MQ=255)                                                                                                             gACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGAcc                                                                               <  1:441232/106‑1 (MQ=255)                                                                                                             gACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGAcc                                                                               >  2:441232/1‑106 (MQ=255)                                                                                                               ccGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCt                                 >  1:450936/1‑150 (MQ=255)                                                                                                                    gcCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAgg                            <  2:109903/150‑1 (MQ=255)                                                                                                                      cTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGa                                          >  2:347854/1‑134 (MQ=255)                                                                                                                      cTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGa                                          <  1:347854/134‑1 (MQ=255)                                                                                                                       tGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGgt                         <  2:450936/150‑1 (MQ=255)                                                                                                                        gACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGgtg                        >  2:600409/1‑150 (MQ=255)                                                                                                                             aCCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCGGTTCTAGAGGCGGCTGCAGGGgtgtgtgt                   >  1:395056/1‑148 (MQ=255)                                                                                                                               cTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGt                                                                      >  2:301304/1‑97 (MQ=255)                                                                                                                               cTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGt                                                                      <  1:301304/97‑1 (MQ=255)                                                                                                                               cTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAAGCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCtat                 >  2:411887/1‑150 (MQ=255)                                                                                                                                        ggTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTc        >  1:356627/1‑150 (MQ=255)                                                                                                                                              cTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCgcc  >  2:279493/1‑150 (MQ=255)                                                                                                                                               tCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCccgggaggttaccgacagcgaggtgagtcaggcgccggtcatgctattcattgaccagctcaccgaaa                                         <  2:418919‑M2/110‑69 (MQ=255)                                                                                                                                               tCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCccgggaggttaccgacagcgaggtgagtcaggcgccggtcatgctattcattgaccagctcaccgaaa                                         >  1:418919‑M2/1‑42 (MQ=255)                                                                                                                                                    gTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCccgggaggttaccgacagcgaggtgagtcaggcgccggtcatgctattcattgaccagctcaccgaaagcaaactggcgcagttgggcaaag                 >  2:286519‑M2/1‑37 (MQ=255)                                                                                                                                                    gTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCccgggaggttaccgacagcgaggtgagtcaggcgccggtcatgctattcattgaccagctcaccgaaagcaaactggcgcagttgggcaaag                 <  1:286519‑M2/129‑93 (MQ=255)                                                                                                                                                    |                                                                                                                                                GTGGTTGTGATCCTGCCTATCCTCCTTTTCCACGTGCATGCCGGTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCC  >  NC_002947/1322041‑1322331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.