New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3581719 | 17 (0.730) | 3 (0.140) | 3/236 | NT | 15.5% | coding (772/942 nt) | PP_3160 | hypothetical protein |
? | NC_002947 | = 3581735 | 17 (0.790) | coding (788/942 nt) | PP_3160 | hypothetical protein |
CCCTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAG > NC_002947/3581570‑3581863 | cccTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGAGACTAAAGCGAGCTGCTGGCTGGGTCCAAAGCAGAGCGAACAGTTCTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTGTGCCGG > 1:284960‑M1/1‑150 (MQ=255) agGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCaa < 2:139470/150‑1 (MQ=255) aaaaaCACGCCAAAAGAAACCAATCGTGGCAACAAAATGACGAACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTACCCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAagcag < 2:42273/149‑1 (MQ=255) cacGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCccgg > 2:474198‑M2/1‑146 (MQ=255) cAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG < 1:512463‑M1/125‑1 (MQ=255) cAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG > 2:512463‑M1/1‑125 (MQ=255) cACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGGCTGCTTGGGCATCCA‑cgggagacgttccttctcaaagtgctt > 2:493176‑M2/1‑123 (MQ=255) gTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGAGTTAAGTATCAAACAAtag > 1:188757/1‑148 (MQ=255) gCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGgctgcttgggcatccaccgggagacgttccttc < 1:364897‑M1/122‑34 (MQ=255) gCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGgctgcttgggcatccaccgggagacgttcctcc > 2:364897‑M1/1‑89 (MQ=255) gCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGgtgt < 1:469523/128‑1 (MQ=255) gCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGgtgt > 2:469523/1‑128 (MQ=255) aaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGtt > 2:554767/1‑141 (MQ=255) aaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGtt < 1:554767/141‑1 (MQ=255) gatcttgctgGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTTTTAAGTATCAAACAATGGGTTGATCGACACCTg < 1:356089/145‑1 (MQ=255) tgctgGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTGTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGc > 2:560876/1‑150 (MQ=255) gctggctgGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGCGTTAAAGAGCAAACAATGGGTTGATCGACACCTggagatc > 2:356089/1‑145 (MQ=255) tCGTGTTAACCGGGCTGTAAAGCACTTTGAGAAGGAACGTCTCTCGG‑‑TGTATGCCCAAGCAGCCCGGGAGACATTGCAGGATGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTGTAGAAAAGCGTGa < 2:188757/150‑1 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCaaa > 2:484766/1‑94 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCaaa < 1:484766/94‑1 (MQ=255) tGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGc < 2:210103/115‑1 (MQ=255) tGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGc > 1:210103/1‑115 (MQ=255) aaGCACTTTGAGAAGGAACGTCTCCCGGtggatgcccaagcagcccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgctgtacgtcatttgggtg > 2:493176‑M1/1‑28 (MQ=255) ggaggAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgc > 2:364897‑M2/3‑33 (MQ=255) gaAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgc < 1:364897‑M2/122‑90 (MQ=255) aaGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGt > 2:440600/1‑117 (MQ=255) aaGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGt < 1:440600/117‑1 (MQ=255) ccGGgctgcttgggcatccaccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgctgtacgtcatttgggtgccacgattggtttcttttggcgtg > 2:474198‑M1/1‑4 (MQ=255) | CCCTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAG > NC_002947/3581570‑3581863 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |