New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3581719	17 (0.730)	3 (0.140)	3/236	NT	15.5%	coding (772/942 nt)	PP_3160	hypothetical protein
	?	NC_002947	= 3581735	17 (0.790)					coding (788/942 nt)	PP_3160	hypothetical protein

CACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAA  >  NC_002947/3581590‑3581862                                                                                                                                                    |                                                                                                                                cacGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCccgg                                                                                                                             >  2:474198‑M2/1‑146 (MQ=255)                         cACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGGCTGCTTGGGCATCCA‑cgggagacgttccttctcaaagtgctt                                                                                                       >  2:493176‑M2/1‑123 (MQ=255)                                     gTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGAGTTAAGTATCAAACAAtag                                                                                         >  1:188757/1‑148 (MQ=255)                                          gCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGgtgt                                                                                                          <  1:469523/128‑1 (MQ=255)                                          gCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGgtgt                                                                                                          >  2:469523/1‑128 (MQ=255)                                                 aaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGtt                                                                                      >  2:554767/1‑141 (MQ=255)                                                 aaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGtt                                                                                      <  1:554767/141‑1 (MQ=255)                                                    gatcttgctgGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTTTTAAGTATCAAACAATGGGTTGATCGACACCTg                                                                          <  1:356089/145‑1 (MQ=255)                                                         tgctgGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTGTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGc                                                                     >  2:560876/1‑150 (MQ=255)                                                          gctggctgGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGCGTTAAAGAGCAAACAATGGGTTGATCGACACCTggagatc                                                                    >  2:356089/1‑145 (MQ=255)                                                                                    tCGTGTTAACCGGGCTGTAAAGCACTTTGAGAAGGAACGTCTCTCGG‑‑TGTATGCCCAAGCAGCCCGGGAGACATTGCAGGATGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTGTAGAAAAGCGTGa                                          <  2:188757/150‑1 (MQ=255)                                                                                       ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCaaa                                                                                               >  2:484766/1‑94 (MQ=255)                                                                                       ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCaaa                                                                                               <  1:484766/94‑1 (MQ=255)                                                                                               tGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGc                                                                  <  2:210103/115‑1 (MQ=255)                                                                                               tGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGc                                                                  >  1:210103/1‑115 (MQ=255)                                                                                                                  ggaggAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgc                                        >  2:364897‑M2/3‑33 (MQ=255)                                                                                                                  gaAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgc                                        <  1:364897‑M2/122‑90 (MQ=255)                                                                                                                   aaGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGt                                            >  2:440600/1‑117 (MQ=255)                                                                                                                   aaGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGt                                            <  1:440600/117‑1 (MQ=255)                                                                                                                                         tGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATCTTCTGAAGTTACCGaaaaa  <  2:373217/139‑1 (MQ=255)                                                                                                                                         tGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATCTTCTGAAGTTACCGaaaaa  >  1:373217/1‑139 (MQ=255)                                                                                                                                                    |                                                                                                                                CACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGG‑‑TGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAA  >  NC_002947/3581590‑3581862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.