New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4163289	26 (1.120)	4 (0.180)	4/240	NT	14.1%	coding (217/1329 nt)	pssA	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	= 4163304	24 (1.090)					coding (202/1329 nt)	pssA	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase

TCTGCACTGGCACGCCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGCCCTGGCATCGGGCA  >  NC_002947/4163142‑4163438                                                                                                                                                    |                                                                                                                                                      tCTGCACTGGCACGCCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTg                                                                                                                                                     >  2:320793/1‑150 (MQ=255)      aCTGGCACGCCATAAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGc                                                                                                                                                <  2:576036/150‑1 (MQ=255)        tGGCACGCCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTc                                                                                                                                              >  1:484080/1‑150 (MQ=255)               ccATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTg                                                                                                                                       >  1:320793‑M2/1‑149 (MQ=255)                 aTGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggc                                                                                                                                     <  2:281280‑M2/150‑4 (MQ=255)                    aaTGGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggcctg                                                                                                                                  >  2:69513‑M2/1‑144 (MQ=255)                      tCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGt                                                                                                                                >  1:318594/1‑150 (MQ=255)                              tCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCa                                                                                                                        >  2:34114/1‑150 (MQ=255)                                  gCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACAATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCa                                                                                                                    >  2:467869/1‑150 (MQ=255)                                   cccGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAg                                                                                                                   >  1:238409/1‑150 (MQ=255)                                      gcgcAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGAc                                                                                                                >  1:392074/1‑150 (MQ=255)                                      gcgcAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGAc                                                                                                                >  1:601336/1‑150 (MQ=255)                                          aaCTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggcct                                                                                                                                   >  1:192466‑M2/1‑122 (MQ=255)                                          aaCTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggcct                                                                                                                                   <  2:192466‑M2/127‑6 (MQ=255)                                                     cgCCTGGTATCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTc                                                                                                 >  1:518661/2‑150 (MQ=255)                                                        ctggtatcAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCAtc                                                                                              <  2:518661/143‑1 (MQ=255)                                                            tACCAGGCGGAATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCaaggccgagcggccaggcctggag                                                                                                                               <  1:562248‑M1/113‑25 (MQ=255)                                                            tACCAGGCGGAATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCaaggccgagcggccaggcctggag                                                                                                                               >  2:562248‑M1/1‑89 (MQ=255)                                                                 ggcggcATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCTCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAg                                                                                     <  2:238409/150‑1 (MQ=255)                                                                    ggcATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACAATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTa                                                                                  <  1:467869/150‑1 (MQ=255)                                                                      cATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCaaggccgagcggccaggcctg                                                                                                                                  <  2:302900‑M1/100‑22 (MQ=255)                                                                      cATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCaaggccgagcggccaggcctg                                                                                                                                  >  1:302900‑M1/1‑79 (MQ=255)                                                                       aTTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACaa                                                                               >  2:479490/1‑150 (MQ=255)                                                                               gCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGcgacga                                                                       <  1:425040/150‑1 (MQ=255)                                                                                      cccGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGAt                                                                <  2:484080/150‑1 (MQ=255)                                                                                        cGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATgc                                                              >  2:50692/1‑150 (MQ=255)                                                                                            ccccAGCAGCCCGCGCCTGGCGCGGAACCAGTCGCCCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCg                                                          >  1:96571/1‑150 (MQ=255)                                                                                             cccAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGa                                                         <  2:318594/150‑1 (MQ=255)                                                                                                agcagcCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTc                                                      >  1:326889/1‑150 (MQ=255)                                                                                                          gcCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGa                                            <  2:310711/150‑1 (MQ=255)                                                                                                                      aCCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAAca                                <  2:392074/150‑1 (MQ=255)                                                                                                                         aGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAGCGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAAcaggc                             <  2:96571/150‑1 (MQ=255)                                                                                                                             gACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACaggcaggc                         >  2:42600/1‑150 (MQ=255)                                                                                                                                     tGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAg                 >  2:155951/1‑150 (MQ=255)                                                                                                                                        tGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGccc              >  1:341127/1‑150 (MQ=255)                                                                                                                                          aTCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGACCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGACAGGCGCGGTAAGCCGTg            >  2:231589/1‑150 (MQ=255)                                                                                                                                            ctcCAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaattccgcctggta                                               <  1:562248‑M2/113‑90 (MQ=255)                                                                                                                                            ctcCAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaattccgcctggta                                               >  2:562248‑M2/1‑24 (MQ=255)                                                                                                                                               cAGGCCaaggccgagcggccaggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatgccgcctggtatcaggcccagcgccagttgcgcgggctggacatcgccatt       >  2:69513‑M1/1‑6 (MQ=255)                                                                                                                                               cAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatg                                                         <  2:302900‑M2/100‑80 (MQ=255)                                                                                                                                               cAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatg                                                         >  1:302900‑M2/1‑21 (MQ=255)                                                                                                                                                aGGCCaaggccgagcggccaggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatgccgcctggtatcaggcccagcgccagtt                             <  2:192466‑M1/127‑123 (MQ=255)                                                                                                                                                aGGCCaaggccgagcggccaggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatgccgcctggtatcaggcccagcgccagtt                             >  1:192466‑M1/1‑5 (MQ=255)                                                                                                                                                  gCCaaggccgagcggccaggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatgccgcctggtatcaggcccagcgccagttgcgcgggctggacatcgcgattcat    <  2:281280‑M1/150‑148 (MQ=255)                                                                                                                                                    caaggccgagcggccaggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatgccgcctggtatcaggcccagcgccagttgcgcgggctggacatcgcgattcatgg  >  1:320793‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TCTGCACTGGCACGCCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGCCCTGGCATCGGGCA  >  NC_002947/4163142‑4163438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.